Variant report

Variant	rs13362768
Chromosome Location	chr6:140460066-140460067
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs6570389	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902659	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6937739	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746257	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746402	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7747450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7748387	1.00[AMR][1000 genomes]
rs7750737	1.00[AMR][1000 genomes]
rs7762281	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7774903	1.00[AMR][1000 genomes]
rs9484341	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484344	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484345	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484346	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495639	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495643	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495665	1.00[AMR][1000 genomes]
rs9885887	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140444000-140460800	Weak transcription	K562	blood
2	chr6:140457400-140461600	Strong transcription	Placenta	Placenta
3	chr6:140458200-140460400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:140458400-140460400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:140458800-140460400	Enhancers	HUVEC	blood vessel
6	chr6:140459600-140460200	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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