Variant report

Variant	rs9484341
Chromosome Location	chr6:140367264-140367265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140363202..140365064-chr6:140365355..140367836,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13362768	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570389	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902659	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6937739	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746257	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746402	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7747450	0.82[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7748387	1.00[AMR][1000 genomes]
rs7750737	1.00[AMR][1000 genomes]
rs7762281	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7774903	1.00[AMR][1000 genomes]
rs9484344	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484345	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484346	1.00[AMR][1000 genomes]
rs9495639	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495643	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495665	1.00[AMR][1000 genomes]
rs9885887	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3395457	chr6:140364559-140368757	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140363400-140370800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:140363400-140370800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:140364400-140367600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:140365600-140373000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:140365600-140374200	Weak transcription	A549	lung
6	chr6:140365800-140371200	Weak transcription	Osteobl	bone
7	chr6:140366200-140368200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:140366400-140368000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr6:140366400-140370600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:140366600-140367400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:140366600-140371200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:140366600-140371200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:140366600-140372000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:140366800-140369400	Weak transcription	Hela-S3	cervix
15	chr6:140366800-140370200	Weak transcription	Fetal Heart	heart
16	chr6:140366800-140370600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:140366800-140370600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:140366800-140370800	Weak transcription	NH-A	brain
19	chr6:140366800-140371400	Weak transcription	HMEC	breast
20	chr6:140366800-140371400	Weak transcription	NHLF	lung
21	chr6:140366800-140371600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:140366800-140371600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:140366800-140372200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:140367000-140367400	Weak transcription	NHEK	skin
25	chr6:140367000-140371400	Weak transcription	HSMM	muscle
26	chr6:140367200-140367600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr6:140367200-140371400	Weak transcription	NHDF-Ad	bronchial

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