Variant report
| Variant | rs7746257 |
|---|---|
| Chromosome Location | chr6:140517978-140517979 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:140505744..140507717-chr6:140517169..140519648,2 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-HECA-9 | chr6:140515859-140520210 | NONHSAT115283 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs13362768 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6570389 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6902659 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6937739 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7746402 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7747450 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7748387 | 1.00[AMR][1000 genomes] |
| rs7762281 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7774903 | 1.00[AMR][1000 genomes] |
| rs9484341 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9484344 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9484345 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9484346 | 1.00[AMR][1000 genomes] |
| rs9495639 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9495643 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9495665 | 1.00[AMR][1000 genomes] |
| rs9885887 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869066 | chr6:139777114-140639695 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016532 | chr6:140174639-141029988 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv886693 | chr6:140444057-140578494 | Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv1825718 | chr6:140476088-140584384 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv5503 | chr6:140511360-140556183 | Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:140516800-140524000 | Weak transcription | Fetal Heart | heart |
| 2 | chr6:140517800-140518000 | ZNF genes & repeats | Left Ventricle | heart |
