Variant report

Variant	rs7774903
Chromosome Location	chr6:140334889-140334890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13362768	1.00[AMR][1000 genomes]
rs6570389	1.00[AMR][1000 genomes]
rs6902659	1.00[AMR][1000 genomes]
rs6937739	1.00[AMR][1000 genomes]
rs7746257	1.00[AMR][1000 genomes]
rs7746402	1.00[AMR][1000 genomes]
rs7747450	1.00[AMR][1000 genomes]
rs7748387	1.00[AMR][1000 genomes]
rs7750737	1.00[AMR][1000 genomes]
rs7762281	1.00[AMR][1000 genomes]
rs9484341	1.00[AMR][1000 genomes]
rs9484344	1.00[AMR][1000 genomes]
rs9484345	1.00[AMR][1000 genomes]
rs9484346	1.00[AMR][1000 genomes]
rs9495639	1.00[AMR][1000 genomes]
rs9495643	1.00[AMR][1000 genomes]
rs9495665	1.00[AMR][1000 genomes]
rs9885887	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv527772	chr6:140332096-140337443	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140324800-140338600	Weak transcription	Pancreas	Pancrea
2	chr6:140333400-140338400	Weak transcription	Liver	Liver
3	chr6:140333600-140335400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:140334000-140335600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:140334200-140335400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:140334600-140335600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:140334800-140335800	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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