Variant report

Variant	rs7748387
Chromosome Location	chr6:140330242-140330243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13362768	1.00[AMR][1000 genomes]
rs6570389	1.00[AMR][1000 genomes]
rs6902659	1.00[AMR][1000 genomes]
rs6937739	1.00[AMR][1000 genomes]
rs7746257	1.00[AMR][1000 genomes]
rs7746402	1.00[AMR][1000 genomes]
rs7747450	1.00[AMR][1000 genomes]
rs7750737	1.00[AMR][1000 genomes]
rs7762281	1.00[AMR][1000 genomes]
rs7774903	1.00[AMR][1000 genomes]
rs9484341	1.00[AMR][1000 genomes]
rs9484344	1.00[AMR][1000 genomes]
rs9484345	1.00[AMR][1000 genomes]
rs9484346	1.00[AMR][1000 genomes]
rs9495639	1.00[AMR][1000 genomes]
rs9495643	1.00[AMR][1000 genomes]
rs9495665	1.00[AMR][1000 genomes]
rs9885887	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140324800-140334000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:140324800-140338600	Weak transcription	Pancreas	Pancrea
3	chr6:140328000-140332600	Weak transcription	Ovary	ovary
4	chr6:140330000-140331200	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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