Variant report

Variant	rs7747450
Chromosome Location	chr6:140468750-140468751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139944678..139946977-chr6:140467437..140468966,2	K562	blood:
2	chr6:140467252..140471466-chr6:140472412..140477060,5	K562	blood:
3	chr6:140461314..140465490-chr6:140468443..140470459,3	MCF-7	breast:
4	chr6:140457343..140459813-chr6:140467846..140470037,2	K562	blood:
5	chr6:140468617..140471093-chr6:140487211..140489040,2	K562	blood:
6	chr6:140468598..140473264-chr6:140478819..140483258,6	K562	blood:
7	chr6:139694328..139697270-chr6:140468541..140471888,4	K562	blood:
8	chr6:140468329..140473264-chr6:140478010..140482818,5	K562	blood:

No data

No data

No data

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13362768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570389	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902659	0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6937739	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746257	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746402	0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7748387	1.00[AMR][1000 genomes]
rs7750737	1.00[AMR][1000 genomes]
rs7762281	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7774903	1.00[AMR][1000 genomes]
rs9484341	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484344	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484345	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484346	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495639	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495643	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495665	1.00[AMR][1000 genomes]
rs9885887	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140460200-140470800	Weak transcription	Right Atrium	heart
2	chr6:140461600-140468800	Weak transcription	Placenta	Placenta
3	chr6:140468000-140472200	Active TSS	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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