Variant report

Variant	rs6902659
Chromosome Location	chr6:140524433-140524434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13362768	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570389	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6937739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746402	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7747450	0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7748387	1.00[AMR][1000 genomes]
rs7762281	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7774903	1.00[AMR][1000 genomes]
rs9484341	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484344	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484345	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484346	1.00[AMR][1000 genomes]
rs9484350	1.00[ASW][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap]
rs9495639	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495643	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495665	1.00[AMR][1000 genomes]
rs9885887	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1825718	chr6:140476088-140584384	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv5503	chr6:140511360-140556183	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140523200-140524800	Enhancers	NHDF-Ad	bronchial
2	chr6:140523200-140525600	Enhancers	NHLF	lung
3	chr6:140523400-140525000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:140523400-140525600	Enhancers	Fetal Lung	lung
5	chr6:140523800-140525000	Enhancers	Adipose Nuclei	Adipose
6	chr6:140523800-140525600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:140523800-140525600	Enhancers	HUVEC	blood vessel
8	chr6:140524000-140524600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:140524000-140525200	Enhancers	Fetal Heart	heart
10	chr6:140524000-140525600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:140524200-140525000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:140524200-140525600	Enhancers	Fetal Stomach	stomach
13	chr6:140524200-140525600	Enhancers	Osteobl	bone
14	chr6:140524200-140525800	Enhancers	Colon Smooth Muscle	Colon
15	chr6:140524400-140525400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:140524400-140525400	Enhancers	Rectal Smooth Muscle	rectum
17	chr6:140524400-140525800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:140524400-140526000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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