The 2.0 version of rSNPBase

Variant report

Variant rs13378904
Chromosome Location chr13:40353270-40353271
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:40340400-40353600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr13:40340400-40361200 Weak transcription Pancreas Pancrea
3 chr13:40341800-40356600 Weak transcription Rectal Smooth Muscle rectum
4 chr13:40342600-40360200 Weak transcription Fetal Muscle Leg muscle
5 chr13:40345400-40354800 Weak transcription Brain Anterior Caudate brain
6 chr13:40347800-40355200 Enhancers HUVEC blood vessel
7 chr13:40350200-40354400 Enhancers Primary T helper 17 cells PMA-I stimulated --
8 chr13:40350200-40357200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr13:40350800-40354000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr13:40351000-40354400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
11 chr13:40351200-40354000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
12 chr13:40351200-40354200 Enhancers Primary T helper cells PMA-I stimulated --
13 chr13:40351600-40353400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr13:40351600-40354600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
15 chr13:40351800-40353400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr13:40351800-40354400 Enhancers Primary T helper naive cells fromperipheralblood blood
17 chr13:40351800-40354400 Enhancers Primary T killer memory cells from peripheral blood blood
18 chr13:40351800-40354600 Enhancers Primary T helper cells fromperipheralblood blood
19 chr13:40351800-40358400 Weak transcription Ovary ovary
20 chr13:40351800-40360200 Weak transcription Left Ventricle heart
21 chr13:40352000-40353400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr13:40352000-40353400 Weak transcription Fetal Adrenal Gland Adrenal Gland
23 chr13:40352000-40354400 Enhancers Primary T helper naive cells from peripheral blood blood
24 chr13:40352000-40354600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
25 chr13:40352000-40361400 Weak transcription iPS-15b Cell Line embryonic stem cell
26 chr13:40352200-40353400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr13:40352200-40353400 Weak transcription HSMMtube muscle
28 chr13:40352200-40353400 Weak transcription NHDF-Ad bronchial
29 chr13:40352200-40353600 Weak transcription NHLF lung
30 chr13:40352200-40353800 Weak transcription Right Atrium heart
31 chr13:40352200-40354400 Enhancers Primary T cells from cord blood blood
32 chr13:40352400-40353400 Weak transcription Muscle Satellite Cultured Cells --
33 chr13:40352400-40353400 Weak transcription HMEC breast
34 chr13:40352400-40353600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr13:40352400-40354400 Enhancers Primary T regulatory cells fromperipheralblood blood
36 chr13:40352400-40354400 Enhancers Primary T killer naive cells fromperipheralblood blood
37 chr13:40352800-40353400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
38 chr13:40352800-40354000 Enhancers Primary T cells fromperipheralblood blood
39 chr13:40353000-40353400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr13:40353200-40353600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr13:40353200-40353600 Flanking Active TSS NH-A brain
42 chr13:40353200-40353800 Enhancers GM12878-XiMat blood
43 chr13:40353200-40354600 Enhancers Osteobl bone

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Last update: Aug 31, 2015