The 2.0 version of rSNPBase

Variant report

Variant rs2324340
Chromosome Location chr13:40130401-40130402
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:40107800-40140200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr13:40111200-40133200 Weak transcription Aorta Aorta
3 chr13:40114000-40131200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
4 chr13:40114400-40136000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
5 chr13:40115400-40133200 Weak transcription Muscle Satellite Cultured Cells --
6 chr13:40115600-40133600 Weak transcription Osteobl bone
7 chr13:40117800-40131200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr13:40120000-40131600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
9 chr13:40121400-40136200 Weak transcription Cortex derived primary cultured neurospheres brain
10 chr13:40123000-40131800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr13:40125000-40131600 Weak transcription Fetal Lung lung
12 chr13:40125400-40133400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
13 chr13:40125600-40131400 Weak transcription HSMM muscle
14 chr13:40125600-40133000 Weak transcription Lung lung
15 chr13:40126400-40137200 Weak transcription NHLF lung
16 chr13:40126800-40130600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr13:40127000-40131200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr13:40127000-40133400 Weak transcription Brain Angular Gyrus brain
19 chr13:40127000-40136200 Weak transcription NHDF-Ad bronchial
20 chr13:40128800-40137600 Weak transcription Colon Smooth Muscle Colon
21 chr13:40129000-40131400 Weak transcription Left Ventricle heart
22 chr13:40129000-40131800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr13:40129000-40133000 Weak transcription Breast Myoepithelial Primary Cells Breast
24 chr13:40129000-40133200 Weak transcription Brain Cingulate Gyrus brain
25 chr13:40129000-40145600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr13:40129000-40152800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr13:40129200-40133200 Weak transcription ES-WA7 Cell Line embryonic stem cell
28 chr13:40129200-40133200 Weak transcription Brain Substantia Nigra brain
29 chr13:40129200-40135800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr13:40129200-40135800 Weak transcription HMEC breast
31 chr13:40129400-40136800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr13:40129800-40131600 Enhancers Ovary ovary
33 chr13:40129800-40133200 Weak transcription ES-I3 Cell Line embryonic stem cell
34 chr13:40130000-40130800 Enhancers Right Atrium heart
35 chr13:40130000-40131000 Enhancers Adipose Nuclei Adipose
36 chr13:40130000-40139600 Weak transcription Fetal Stomach stomach
37 chr13:40130200-40130600 Weak transcription Fetal Muscle Leg muscle
38 chr13:40130200-40130800 Enhancers Fetal Heart heart
39 chr13:40130200-40131400 Enhancers Right Ventricle heart
40 chr13:40130400-40131800 Enhancers HSMMtube muscle
41 chr13:40130400-40133600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015