Variant report
| Variant | rs4268631 |
|---|---|
| Chromosome Location | chr13:40227431-40227432 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | E2F4 | chr13:40227356-40227548 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| COG6 | TF binding region |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs1006635 | 1.00[AMR][1000 genomes] |
| rs13378904 | 1.00[AMR][1000 genomes] |
| rs17060145 | 1.00[AMR][1000 genomes] |
| rs2324340 | 1.00[AMR][1000 genomes] |
| rs3000477 | 1.00[AMR][1000 genomes] |
| rs3000480 | 1.00[AMR][1000 genomes] |
| rs3000484 | 1.00[AMR][1000 genomes] |
| rs3000486 | 1.00[AMR][1000 genomes] |
| rs3012138 | 1.00[AMR][1000 genomes] |
| rs3012148 | 1.00[AMR][1000 genomes] |
| rs3012150 | 1.00[AMR][1000 genomes] |
| rs4318086 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4324019 | 1.00[AMR][1000 genomes] |
| rs4326926 | 1.00[AMR][1000 genomes] |
| rs4383025 | 1.00[AMR][1000 genomes] |
| rs4488331 | 1.00[AMR][1000 genomes] |
| rs4943690 | 1.00[AMR][1000 genomes] |
| rs6563741 | 1.00[AMR][1000 genomes] |
| rs6563744 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7319899 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7333700 | 1.00[AMR][1000 genomes] |
| rs7336514 | 1.00[AMR][1000 genomes] |
| rs7490747 | 1.00[AMR][1000 genomes] |
| rs7996170 | 1.00[AMR][1000 genomes] |
| rs9315727 | 1.00[AMR][1000 genomes] |
| rs9532415 | 1.00[AMR][1000 genomes] |
| rs9532418 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9532421 | 1.00[AMR][1000 genomes] |
| rs9548864 | 1.00[AMR][1000 genomes] |
| rs9594354 | 1.00[AMR][1000 genomes] |
| rs9603614 | 1.00[AMR][1000 genomes] |
| rs9805352 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054600 | chr13:39801283-40545027 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1054797 | chr13:40198744-40618428 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv541755 | chr13:40198744-40618428 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv832586 | chr13:40222880-40379063 | Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:40227400-40229400 | Weak transcription | Aorta | Aorta |
