Variant report

Variant	rs9594354
Chromosome Location	chr13:40215154-40215155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COG6-1	chr13:40214443-40215175	XLOC_010354

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1006635	1.00[AMR][1000 genomes]
rs13378904	1.00[AMR][1000 genomes]
rs17060145	1.00[AMR][1000 genomes]
rs2324340	1.00[AMR][1000 genomes]
rs3000477	1.00[AMR][1000 genomes]
rs3000480	1.00[AMR][1000 genomes]
rs3000484	1.00[AMR][1000 genomes]
rs3000486	1.00[AMR][1000 genomes]
rs3012138	1.00[AMR][1000 genomes]
rs3012148	1.00[AMR][1000 genomes]
rs3012150	1.00[AMR][1000 genomes]
rs4268631	1.00[AMR][1000 genomes]
rs4318086	1.00[AMR][1000 genomes]
rs4324019	1.00[AMR][1000 genomes]
rs4326926	1.00[AMR][1000 genomes]
rs4383025	1.00[AMR][1000 genomes]
rs4488331	1.00[AMR][1000 genomes]
rs4943690	1.00[AMR][1000 genomes]
rs6563741	1.00[AMR][1000 genomes]
rs6563744	1.00[AMR][1000 genomes]
rs7319899	1.00[AMR][1000 genomes]
rs7333700	1.00[AMR][1000 genomes]
rs7336514	1.00[AMR][1000 genomes]
rs7490747	1.00[AMR][1000 genomes]
rs7996170	1.00[AMR][1000 genomes]
rs9315727	1.00[AMR][1000 genomes]
rs9532415	1.00[AMR][1000 genomes]
rs9532418	1.00[AMR][1000 genomes]
rs9532421	1.00[AMR][1000 genomes]
rs9548864	1.00[AMR][1000 genomes]
rs9603614	1.00[AMR][1000 genomes]
rs9805352	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1054797	chr13:40198744-40618428	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
4	nsv541755	chr13:40198744-40618428	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
5	esv3363652	chr13:40199001-40221148	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv974009	chr13:40212255-40222785	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40215000-40215200	Enhancers	Brain Angular Gyrus	brain

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