Variant report

Variant	rs13424239
Chromosome Location	chr2:213531142-213531143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10171052	0.85[EUR][1000 genomes]
rs10179457	0.92[EUR][1000 genomes]
rs10179622	0.92[EUR][1000 genomes]
rs10180242	0.81[EUR][1000 genomes]
rs10185470	0.80[EUR][1000 genomes]
rs10186885	0.81[EUR][1000 genomes]
rs10193213	0.81[EUR][1000 genomes]
rs10195898	0.80[EUR][1000 genomes]
rs10204755	0.92[EUR][1000 genomes]
rs10205609	0.81[EUR][1000 genomes]
rs10210112	0.92[EUR][1000 genomes]
rs13383234	0.81[EUR][1000 genomes]
rs13384047	0.92[EUR][1000 genomes]
rs13384253	0.92[EUR][1000 genomes]
rs13400391	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13401993	0.92[EUR][1000 genomes]
rs13402051	0.92[EUR][1000 genomes]
rs13402119	0.92[EUR][1000 genomes]
rs13404602	0.92[EUR][1000 genomes]
rs13404790	0.92[EUR][1000 genomes]
rs13405155	0.92[EUR][1000 genomes]
rs13415082	0.81[EUR][1000 genomes]
rs13418175	0.92[EUR][1000 genomes]
rs13418296	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418412	0.92[EUR][1000 genomes]
rs13418742	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426180	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16849091	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1987801	0.92[EUR][1000 genomes]
rs2054614	0.81[EUR][1000 genomes]
rs28794520	0.81[EUR][1000 genomes]
rs28852185	0.84[EUR][1000 genomes]
rs56159667	0.92[EUR][1000 genomes]
rs56164335	0.81[EUR][1000 genomes]
rs6754237	1.00[EUR][1000 genomes]
rs72933024	1.00[EUR][1000 genomes]
rs72933056	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72937326	0.81[EUR][1000 genomes]
rs72937336	0.81[EUR][1000 genomes]
rs72937359	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72937379	0.81[EUR][1000 genomes]
rs72949047	0.92[EUR][1000 genomes]
rs72949055	0.92[EUR][1000 genomes]
rs7585872	0.81[EUR][1000 genomes]
rs7596833	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2520194	chr2:213529709-213531182	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213529600-213532800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:213530000-213531400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:213531000-213531200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:213531000-213532600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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