Variant report

Variant	rs1419440
Chromosome Location	chr7:126654356-126654357
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:126651745-126656082..7:126890676-126899918	H1-hESC	embryonic stem cell:	embryo
2	7:126651745-126656082..7:126756671-126761022	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10268335	1.00[CEU][hapmap]
rs10271115	1.00[CEU][hapmap]
rs10487464	1.00[CEU][hapmap]
rs10487465	1.00[CEU][hapmap]
rs10487466	1.00[CEU][hapmap]
rs11563503	1.00[CEU][hapmap]
rs11563505	1.00[CEU][hapmap]
rs11563749	1.00[CEU][hapmap]
rs11563750	1.00[CEU][hapmap]
rs11563755	1.00[CEU][hapmap]
rs11563756	1.00[CEU][hapmap]
rs11563757	1.00[CEU][hapmap]
rs11563758	1.00[CEU][hapmap]
rs11563759	1.00[CEU][hapmap]
rs11563760	1.00[CEU][hapmap]
rs11563761	1.00[CEU][hapmap]
rs11563762	1.00[CEU][hapmap]
rs11563764	1.00[CEU][hapmap]
rs11563765	1.00[CEU][hapmap]
rs11563766	1.00[CEU][hapmap]
rs11563767	1.00[CEU][hapmap]
rs11563768	1.00[CEU][hapmap]
rs11563769	1.00[CEU][hapmap]
rs11563771	1.00[CEU][hapmap]
rs11563772	1.00[CEU][hapmap]
rs11563773	1.00[CEU][hapmap]
rs11563774	1.00[CEU][hapmap]
rs11563787	1.00[CEU][hapmap]
rs11563788	1.00[CEU][hapmap]
rs12667596	1.00[CEU][hapmap]
rs12670200	1.00[CEU][hapmap]
rs12670241	1.00[CEU][hapmap]
rs12670940	1.00[CEU][hapmap]
rs1419441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862270	0.87[CEU][hapmap]
rs17862273	1.00[CEU][hapmap]
rs17862275	1.00[CEU][hapmap]
rs17862277	1.00[CEU][hapmap]
rs17863187	1.00[CEU][hapmap]
rs17863198	1.00[CEU][hapmap]
rs17863199	1.00[CEU][hapmap]
rs17864094	1.00[CEU][hapmap]
rs17866413	1.00[CEU][hapmap]
rs17867742	1.00[CEU][hapmap]
rs17867745	1.00[CEU][hapmap]
rs17868694	1.00[CEU][hapmap]
rs2237781	1.00[CEU][hapmap]
rs2402849	1.00[CEU][hapmap]
rs3779538	1.00[CEU][hapmap]
rs3779539	1.00[CEU][hapmap]
rs3808129	1.00[CEU][hapmap]
rs3808130	1.00[CEU][hapmap]
rs6467106	1.00[CEU][hapmap]
rs6467107	1.00[CEU][hapmap]
rs6467108	1.00[CEU][hapmap]
rs6467109	1.00[CEU][hapmap]
rs6958658	1.00[CEU][hapmap]
rs6962580	1.00[CEU][hapmap]
rs7795745	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv608379	chr7:126643692-126657545	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv971543	chr7:126653280-126657192	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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