Variant report

Variant	rs17863187
Chromosome Location	chr7:126681308-126681309
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:126678600-126685844..7:127233104-127239235	H1-hESC	embryonic stem cell:	embryo
2	7:126085913-126088095..7:126678600-126685844	K562	blood:
3	7:126678600-126685844..7:127009457-127018926	H1-hESC	embryonic stem cell:	embryo
4	7:126678600-126685844..7:126890676-126899918	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000048405	Chromatin interaction
ENSG00000179562	Chromatin interaction
ENSG00000179603	Chromatin interaction
ENSG00000106328	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10268335	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10271115	1.00[CEU][hapmap]
rs10487464	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10487465	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10487466	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563503	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11563505	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11563749	1.00[CEU][hapmap]
rs11563750	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11563755	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563756	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563757	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563758	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563759	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563760	1.00[CEU][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563761	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11563762	1.00[CEU][hapmap]
rs11563764	1.00[CEU][hapmap]
rs11563765	1.00[CEU][hapmap]
rs11563766	1.00[CEU][hapmap]
rs11563767	1.00[CEU][hapmap]
rs11563768	1.00[CEU][hapmap]
rs11563769	1.00[CEU][hapmap]
rs11563771	1.00[CEU][hapmap]
rs11563772	1.00[CEU][hapmap]
rs11563773	1.00[CEU][hapmap]
rs11563774	1.00[CEU][hapmap]
rs11563782	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11563787	1.00[CEU][hapmap]
rs11563788	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12667596	1.00[CEU][hapmap]
rs12669516	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12670200	1.00[CEU][hapmap]
rs12670241	1.00[CEU][hapmap]
rs12670940	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1419440	1.00[CEU][hapmap]
rs1419441	1.00[CEU][hapmap]
rs17862270	0.87[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17862273	1.00[CEU][hapmap]
rs17862275	1.00[CEU][hapmap]
rs17862277	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17863198	1.00[CEU][hapmap]
rs17863199	1.00[CEU][hapmap]
rs17864094	1.00[CEU][hapmap];0.85[ASN][1000 genomes]
rs17864106	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17866413	1.00[CEU][hapmap]
rs17867742	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17867745	1.00[CEU][hapmap]
rs17868694	1.00[CEU][hapmap]
rs17874838	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2237781	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2299526	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2402849	1.00[CEU][hapmap]
rs3779538	1.00[CEU][hapmap]
rs3779539	1.00[CEU][hapmap]
rs3808129	1.00[CEU][hapmap]
rs3808130	1.00[CEU][hapmap]
rs62468871	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62468872	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6467106	1.00[CEU][hapmap]
rs6467107	1.00[CEU][hapmap]
rs6467108	1.00[CEU][hapmap]
rs6467109	1.00[CEU][hapmap]
rs6958658	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6962580	1.00[CEU][hapmap]
rs7795745	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	esv3327508	chr7:126678741-126681489	Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3431188	chr7:126680945-126681393	Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126676600-126682000	Weak transcription	Liver	Liver

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