Variant report

Variant	rs1443498
Chromosome Location	chr10:18253761-18253762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11011692	1.00[EUR][1000 genomes]
rs12245592	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12262999	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16916738	1.00[CEU][hapmap]
rs28684480	1.00[EUR][1000 genomes]
rs4595442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7085495	1.00[EUR][1000 genomes]
rs7085502	1.00[EUR][1000 genomes]
rs74118058	1.00[AMR][1000 genomes]
rs74118062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74118065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74118066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74118067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74118068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74118071	1.00[EUR][1000 genomes]
rs74118072	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74118073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74118075	1.00[EUR][1000 genomes]
rs74118077	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755188	chr10:17881747-18292594	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18249400-18258200	Weak transcription	Brain Substantia Nigra	brain
2	chr10:18252400-18254400	Weak transcription	Fetal Lung	lung
3	chr10:18252800-18254400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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