Variant report
| Variant | rs74118065 |
|---|---|
| Chromosome Location | chr10:18264288-18264289 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:18263243..18266172-chr12:133262422..133264353,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000176894 | Chromatin interaction |
| ENSG00000177084 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11011692 | 1.00[EUR][1000 genomes] |
| rs12245592 | 1.00[EUR][1000 genomes] |
| rs12262999 | 1.00[EUR][1000 genomes] |
| rs1443498 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28684480 | 1.00[EUR][1000 genomes] |
| rs4595442 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7085495 | 1.00[EUR][1000 genomes] |
| rs7085502 | 1.00[EUR][1000 genomes] |
| rs74118058 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74118062 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74118063 | 0.95[AFR][1000 genomes] |
| rs74118066 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74118067 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74118068 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74118071 | 0.93[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74118072 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74118073 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74118075 | 1.00[EUR][1000 genomes] |
| rs74118077 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2755188 | chr10:17881747-18292594 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv3415320 | chr10:18122232-18333356 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1039655 | chr10:18252931-18348954 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
