Variant report

Variant	rs74118072
Chromosome Location	chr10:18271791-18271792
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11011692	1.00[EUR][1000 genomes]
rs12245592	1.00[EUR][1000 genomes]
rs12262999	1.00[EUR][1000 genomes]
rs1443498	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28684480	1.00[EUR][1000 genomes]
rs4595442	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7085495	1.00[EUR][1000 genomes]
rs7085502	1.00[EUR][1000 genomes]
rs74118058	0.87[AMR][1000 genomes]
rs74118062	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74118065	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74118066	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74118067	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74118068	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74118071	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74118073	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74118075	1.00[EUR][1000 genomes]
rs74118077	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755188	chr10:17881747-18292594	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18266800-18276400	Weak transcription	Brain Substantia Nigra	brain
2	chr10:18268600-18271800	Enhancers	Osteobl	bone
3	chr10:18269600-18271800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:18269600-18271800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:18269600-18271800	Enhancers	NHDF-Ad	bronchial
6	chr10:18269800-18271800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:18269800-18271800	Enhancers	NHLF	lung
8	chr10:18270000-18271800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:18270200-18271800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:18270600-18271800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:18271200-18271800	Enhancers	NH-A	brain
12	chr10:18271200-18272800	Weak transcription	HSMM	muscle
13	chr10:18271200-18273000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:18271200-18273000	Weak transcription	HSMMtube	muscle
15	chr10:18271400-18272200	Weak transcription	Hela-S3	cervix
16	chr10:18271400-18272800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:18271400-18273000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:18271600-18272800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:18271600-18272800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:18271600-18272800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:18271600-18272800	Weak transcription	NHEK	skin

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