Variant report

Variant	rs28684480
Chromosome Location	chr10:18242785-18242786
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11011692	1.00[EUR][1000 genomes]
rs12245592	1.00[EUR][1000 genomes]
rs12262999	1.00[EUR][1000 genomes]
rs1443498	1.00[EUR][1000 genomes]
rs4595442	1.00[EUR][1000 genomes]
rs7085495	1.00[EUR][1000 genomes]
rs7085502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74118062	1.00[EUR][1000 genomes]
rs74118065	1.00[EUR][1000 genomes]
rs74118066	1.00[EUR][1000 genomes]
rs74118067	1.00[EUR][1000 genomes]
rs74118068	1.00[EUR][1000 genomes]
rs74118071	1.00[EUR][1000 genomes]
rs74118072	1.00[EUR][1000 genomes]
rs74118073	1.00[EUR][1000 genomes]
rs74118075	1.00[EUR][1000 genomes]
rs74118077	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755188	chr10:17881747-18292594	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18239200-18244200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:18241000-18243000	Active TSS	Brain Anterior Caudate	brain
3	chr10:18241200-18243200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:18241200-18243800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:18241200-18244000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:18242200-18244000	Weak transcription	NH-A	brain
7	chr10:18242400-18246200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:18242600-18242800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:18242600-18246600	Weak transcription	Brain Substantia Nigra	brain
10	chr10:18242600-18248800	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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