Variant report

Variant	rs1452289
Chromosome Location	chr10:48592618-48592619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10736371	0.83[EUR][1000 genomes]
rs10749628	0.82[EUR][1000 genomes]
rs10788713	0.84[EUR][1000 genomes]
rs1452291	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1869167	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1890776	0.84[EUR][1000 genomes]
rs2100343	0.84[EUR][1000 genomes]
rs2382746	0.83[EUR][1000 genomes]
rs2382747	0.90[EUR][1000 genomes]
rs3850926	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4256917	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4465317	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7074717	0.85[EUR][1000 genomes]
rs7092829	0.84[EUR][1000 genomes]
rs716709	0.84[EUR][1000 genomes]
rs718332	0.84[EUR][1000 genomes]
rs896570	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs930739	0.83[EUR][1000 genomes]
rs9421840	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9422316	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9422319	0.97[ASN][1000 genomes]
rs9422323	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9422326	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9422327	0.83[EUR][1000 genomes]
rs9422348	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9422349	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9731295	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs987901	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48575600-48598200	Weak transcription	NH-A	brain
2	chr10:48591400-48594000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:48591600-48593200	Enhancers	NHEK	skin
4	chr10:48591800-48593000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:48591800-48593400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:48592000-48593000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:48592000-48593000	Enhancers	NHDF-Ad	bronchial
8	chr10:48592000-48593200	Enhancers	HMEC	breast
9	chr10:48592000-48593600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:48592200-48593000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:48592200-48593200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr10:48592400-48593000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:48592400-48598200	Weak transcription	Osteobl	bone
14	chr10:48592400-48599000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:48592600-48593000	Enhancers	Esophagus	oesophagus

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