Variant report

Variant	rs3850926
Chromosome Location	chr10:48574403-48574404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:48573259..48576256-chr10:48576994..48579438,2	K562	blood:
2	chr10:48573686..48575783-chr10:48577715..48579517,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1452289	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1452291	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1869167	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2382747	0.84[EUR][1000 genomes]
rs4256917	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4465317	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs896570	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9421840	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9422316	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9422319	0.95[ASN][1000 genomes]
rs9422323	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9422326	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9422348	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9422349	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9731295	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs987901	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3850926	TP53I13	trans	cerebellum	SCAN

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48571400-48574800	Enhancers	Placenta Amnion	Placenta Amnion
2	chr10:48572200-48575000	Enhancers	NHLF	lung
3	chr10:48572600-48574800	Enhancers	Lung	lung
4	chr10:48572800-48575000	Enhancers	HMEC	breast
5	chr10:48573000-48575200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:48573400-48574800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:48573600-48574800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr10:48573600-48574800	Enhancers	Fetal Stomach	stomach
9	chr10:48573600-48575000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:48573600-48575400	Enhancers	NHEK	skin
11	chr10:48573800-48574600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:48573800-48574600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:48573800-48574600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:48573800-48574600	Enhancers	Adipose Nuclei	Adipose
15	chr10:48573800-48574600	Enhancers	Brain Hippocampus Middle	brain
16	chr10:48573800-48574800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:48573800-48574800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:48573800-48574800	Enhancers	Esophagus	oesophagus
19	chr10:48573800-48575000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:48573800-48575000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:48573800-48575000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:48573800-48575000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:48573800-48575000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:48573800-48575000	Enhancers	Fetal Lung	lung
25	chr10:48573800-48575000	Enhancers	Placenta	Placenta
26	chr10:48573800-48575000	Enhancers	NHDF-Ad	bronchial
27	chr10:48573800-48575200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr10:48574000-48574600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:48574000-48574600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr10:48574000-48574800	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr10:48574000-48574800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr10:48574000-48574800	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr10:48574000-48574800	Enhancers	Brain Cingulate Gyrus	brain
34	chr10:48574000-48575000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:48574000-48575000	Enhancers	Primary T cells fromperipheralblood	blood
36	chr10:48574000-48575000	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr10:48574000-48575000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:48574000-48578200	Weak transcription	Spleen	Spleen
39	chr10:48574200-48574600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:48574200-48574800	Enhancers	Primary T cells from cord blood	blood
41	chr10:48574200-48575000	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr10:48574200-48575000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr10:48574200-48576000	Weak transcription	Thymus	Thymus
44	chr10:48574200-48577800	Weak transcription	Colon Smooth Muscle	Colon
45	chr10:48574400-48574600	Enhancers	Brain Substantia Nigra	brain
46	chr10:48574400-48574800	Flanking Active TSS	NH-A	brain
47	chr10:48574400-48574800	Flanking Active TSS	Osteobl	bone
48	chr10:48574400-48575000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr10:48574400-48575000	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr10:48574400-48578000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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