Variant report

Variant	rs9422349
Chromosome Location	chr10:48588232-48588233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10736371	0.82[EUR][1000 genomes]
rs10749628	0.81[EUR][1000 genomes]
rs10788713	0.83[EUR][1000 genomes]
rs1452289	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452291	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1869167	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1890776	0.83[EUR][1000 genomes]
rs2100343	0.83[EUR][1000 genomes]
rs2382746	0.82[EUR][1000 genomes]
rs2382747	0.89[EUR][1000 genomes]
rs3850926	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4256917	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4465317	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7074717	0.84[EUR][1000 genomes]
rs7092829	0.83[EUR][1000 genomes]
rs716709	0.83[EUR][1000 genomes]
rs718332	0.83[EUR][1000 genomes]
rs896570	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs930739	0.82[EUR][1000 genomes]
rs9421840	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9422316	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9422319	0.97[ASN][1000 genomes]
rs9422323	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9422326	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9422327	0.82[EUR][1000 genomes]
rs9422348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9731295	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs987901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9422349	TP53I13	trans	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48575600-48598200	Weak transcription	NH-A	brain
2	chr10:48586600-48591800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:48588200-48589600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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