Variant report

Variant	rs9422348
Chromosome Location	chr10:48587505-48587506
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:48574683..48577036-chr10:48584937..48587666,2	K562	blood:
2	chr10:48585104..48587866-chr10:48597542..48600033,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10736371	0.81[EUR][1000 genomes]
rs10749628	0.80[EUR][1000 genomes]
rs10788713	0.81[EUR][1000 genomes]
rs1452289	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1452291	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1869167	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1890776	0.81[EUR][1000 genomes]
rs2100343	0.81[EUR][1000 genomes]
rs2382746	0.81[EUR][1000 genomes]
rs2382747	0.88[EUR][1000 genomes]
rs3850926	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4256917	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4465317	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7074717	0.83[EUR][1000 genomes]
rs7092829	0.81[EUR][1000 genomes]
rs716709	0.81[EUR][1000 genomes]
rs718332	0.81[EUR][1000 genomes]
rs896570	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs930739	0.81[EUR][1000 genomes]
rs9421840	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9422316	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9422319	0.97[ASN][1000 genomes]
rs9422323	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9422326	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9422327	0.81[EUR][1000 genomes]
rs9422349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9731295	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs987901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9422348	TP53I13	trans	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48575600-48598200	Weak transcription	NH-A	brain
2	chr10:48584600-48588200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:48586600-48591800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:48587200-48588000	Enhancers	Fetal Stomach	stomach

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