Variant report

Variant	rs4256917
Chromosome Location	chr10:48574132-48574133
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:48573259..48576256-chr10:48576994..48579438,2	K562	blood:
2	chr10:48573686..48575783-chr10:48577715..48579517,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1452289	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1452291	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1869167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2382747	0.86[EUR][1000 genomes]
rs3850926	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4465317	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7074717	0.80[EUR][1000 genomes]
rs896570	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9421840	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9422316	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9422319	0.95[ASN][1000 genomes]
rs9422323	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9422326	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9422348	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9422349	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9731295	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs987901	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4256917	TP53I13	trans	cerebellum	SCAN

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48571200-48574400	Enhancers	NH-A	brain
2	chr10:48571400-48574800	Enhancers	Placenta Amnion	Placenta Amnion
3	chr10:48572200-48574400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr10:48572200-48575000	Enhancers	NHLF	lung
5	chr10:48572600-48574800	Enhancers	Lung	lung
6	chr10:48572800-48574200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr10:48572800-48575000	Enhancers	HMEC	breast
8	chr10:48573000-48574200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
9	chr10:48573000-48574200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:48573000-48574400	Enhancers	Stomach Mucosa	stomach
11	chr10:48573000-48575200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:48573400-48574800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:48573600-48574200	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr10:48573600-48574200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr10:48573600-48574400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
16	chr10:48573600-48574400	Flanking Active TSS	Brain Substantia Nigra	brain
17	chr10:48573600-48574800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr10:48573600-48574800	Enhancers	Fetal Stomach	stomach
19	chr10:48573600-48575000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:48573600-48575400	Enhancers	NHEK	skin
21	chr10:48573800-48574200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr10:48573800-48574200	Enhancers	Colon Smooth Muscle	Colon
23	chr10:48573800-48574200	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr10:48573800-48574200	Enhancers	Fetal Thymus	thymus
25	chr10:48573800-48574200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
26	chr10:48573800-48574400	Enhancers	Primary B cells from cord blood	blood
27	chr10:48573800-48574400	Enhancers	Primary B cells from peripheral blood	blood
28	chr10:48573800-48574400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr10:48573800-48574400	Enhancers	Brain Anterior Caudate	brain
30	chr10:48573800-48574400	Enhancers	Fetal Muscle Leg	muscle
31	chr10:48573800-48574400	Enhancers	Osteobl	bone
32	chr10:48573800-48574600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:48573800-48574600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:48573800-48574600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr10:48573800-48574600	Enhancers	Adipose Nuclei	Adipose
36	chr10:48573800-48574600	Enhancers	Brain Hippocampus Middle	brain
37	chr10:48573800-48574800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:48573800-48574800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:48573800-48574800	Enhancers	Esophagus	oesophagus
40	chr10:48573800-48575000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:48573800-48575000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:48573800-48575000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:48573800-48575000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:48573800-48575000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:48573800-48575000	Enhancers	Fetal Lung	lung
46	chr10:48573800-48575000	Enhancers	Placenta	Placenta
47	chr10:48573800-48575000	Enhancers	NHDF-Ad	bronchial
48	chr10:48573800-48575200	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr10:48574000-48574200	Enhancers	Primary hematopoietic stem cells	blood
50	chr10:48574000-48574200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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