The 2.0 version of rSNPBase

Variant report

Variant rs1465695
Chromosome Location chr19:19588546-19588547
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:19577800-19598000 Weak transcription Ovary ovary
2 chr19:19579200-19598000 Weak transcription Small Intestine intestine
3 chr19:19579400-19599400 Weak transcription Brain Angular Gyrus brain
4 chr19:19579800-19591000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
5 chr19:19579800-19593400 Weak transcription Fetal Kidney kidney
6 chr19:19579800-19595600 Weak transcription Osteobl bone
7 chr19:19579800-19595800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr19:19579800-19595800 Weak transcription Colon Smooth Muscle Colon
9 chr19:19579800-19595800 Weak transcription HUVEC blood vessel
10 chr19:19579800-19598600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr19:19579800-19599200 Weak transcription Brain Cingulate Gyrus brain
12 chr19:19579800-19599800 Weak transcription Brain Substantia Nigra brain
13 chr19:19580600-19595200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr19:19580600-19597200 Weak transcription Brain Anterior Caudate brain
15 chr19:19580800-19593600 Strong transcription Fetal Intestine Small intestine
16 chr19:19581400-19589000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
17 chr19:19581600-19595200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr19:19582200-19597600 Strong transcription Dnd41 blood
19 chr19:19583400-19588800 Genic enhancers Primary T cells fromperipheralblood blood
20 chr19:19583600-19588600 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
21 chr19:19583600-19588800 Enhancers Skeletal Muscle Female skeletal muscle
22 chr19:19583600-19589200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr19:19583600-19593200 Weak transcription Fetal Lung lung
24 chr19:19584200-19588600 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
25 chr19:19584200-19600000 Weak transcription Rectal Smooth Muscle rectum
26 chr19:19584400-19589000 Genic enhancers Primary T helper naive cells fromperipheralblood blood
27 chr19:19584400-19595600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr19:19585200-19589200 Enhancers Primary T helper naive cells from peripheral blood blood
29 chr19:19585200-19591000 Weak transcription Placenta Amnion Placenta Amnion
30 chr19:19585400-19589200 Enhancers Primary T helper 17 cells PMA-I stimulated --
31 chr19:19585400-19591000 Weak transcription Duodenum Smooth Muscle Duodenum
32 chr19:19585400-19591200 Weak transcription Aorta Aorta
33 chr19:19585400-19596000 Weak transcription HMEC breast
34 chr19:19585600-19589000 Enhancers Primary T killer memory cells from peripheral blood blood
35 chr19:19585600-19594200 Weak transcription NH-A brain
36 chr19:19585800-19588800 Genic enhancers Primary mononuclear cells fromperipheralblood Blood
37 chr19:19585800-19591200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr19:19586000-19588600 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr19:19586200-19588800 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
40 chr19:19586200-19593200 Weak transcription Fetal Heart heart
41 chr19:19586200-19593600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr19:19586400-19589400 Enhancers Stomach Mucosa stomach
43 chr19:19586400-19595600 Weak transcription NHDF-Ad bronchial
44 chr19:19586600-19588800 Enhancers Primary T killer naive cells fromperipheralblood blood
45 chr19:19586600-19588800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr19:19586600-19589200 Strong transcription Fetal Stomach stomach
47 chr19:19586600-19593600 Weak transcription Psoas Muscle Psoas
48 chr19:19586800-19589800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
49 chr19:19586800-19590800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr19:19586800-19594000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015