Variant report

Variant	rs10422819
Chromosome Location	chr19:19643028-19643029
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:19642732..19643639-chr19:19754351..19755223,5	K562	blood:
2	chr19:19624801..19628442-chr19:19640614..19645032,4	MCF-7	breast:
3	chr19:19642455..19644774-chr19:19648447..19650007,2	MCF-7	breast:
4	chr19:19637478..19643205-chr19:19752988..19755970,5	MCF-7	breast:
5	chr19:19640933..19643322-chr19:19754453..19756328,2	K562	blood:
6	chr19:19625745..19628806-chr19:19639215..19643547,5	K562	blood:
7	chr19:19642579..19643273-chr19:19664895..19665828,4	K562	blood:
8	chr19:19640161..19645536-chr19:19752406..19756434,6	K562	blood:
9	chr19:19642918..19643611-chr19:19753841..19754451,2	MCF-7	breast:
10	chr19:19642718..19643690-chr19:19664655..19665564,3	MCF-7	breast:
11	chr19:19642697..19643765-chr19:19754263..19755262,15	MCF-7	breast:
12	chr19:19642851..19643645-chr19:19754387..19755092,2	MCF-7	breast:
13	chr19:19642720..19643620-chr19:19663281..19664454,3	K562	blood:
14	chr19:19641380..19649124-chr19:19737025..19742358,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000178093	Chromatin interaction
ENSG00000089639	Chromatin interaction
ENSG00000160161	Chromatin interaction
ENSG00000258674	Chromatin interaction
ENSG00000064547	Chromatin interaction
ENSG00000186010	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1000237	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10282	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10401193	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs10402308	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[ASN][1000 genomes]
rs10402451	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10402627	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10404728	0.86[ASN][1000 genomes]
rs10405625	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10410664	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10414830	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10419912	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1047361	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1054284	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.81[LWK][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1054930	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1063966	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11669516	0.92[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs12972397	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs12973258	0.94[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap]
rs12975119	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12977524	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs12981405	0.86[ASN][1000 genomes]
rs13964	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs1465695	0.86[ASN][1000 genomes]
rs1469712	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1469713	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs15622	0.96[CEU][hapmap];0.89[LWK][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap]
rs1808653	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1858999	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[ASN][1000 genomes]
rs1865034	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2074089	0.96[CEU][hapmap];0.86[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap]
rs2074090	0.96[CEU][hapmap];0.86[LWK][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap]
rs2082421	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2099333	0.86[ASN][1000 genomes]
rs2099334	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2163804	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2163805	0.81[ASN][1000 genomes]
rs2285627	0.96[CEU][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs2288852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2304098	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2315279	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2315281	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2315610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2905421	0.92[CEU][hapmap];0.89[LWK][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap]
rs2905424	0.96[CEU][hapmap];0.85[JPT][hapmap];0.89[LWK][hapmap];0.87[MEX][hapmap];0.86[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap]
rs2905425	0.96[CEU][hapmap];0.85[JPT][hapmap]
rs2905431	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2916069	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2916073	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2916074	0.94[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.88[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2916076	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2965180	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2965182	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2965183	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2965185	0.94[ASW][hapmap];0.88[CEU][hapmap];0.89[LWK][hapmap];0.92[MKK][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap]
rs2965188	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2965189	0.94[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.88[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2965193	0.92[CEU][hapmap];0.89[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap]
rs2965198	0.96[CEU][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap]
rs34277109	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34647936	0.81[ASN][1000 genomes]
rs35418933	0.82[ASN][1000 genomes]
rs3752151	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3794990	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3794993	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4808198	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4808199	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4808200	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4808202	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4808203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4808208	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4808955	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4808957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4808959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4808960	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4808961	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4808964	0.94[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4808965	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4808967	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60003758	0.81[ASN][1000 genomes]
rs6511036	0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs6511038	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6909	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7245983	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7250893	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7252888	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7253807	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7256149	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs747050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs751856	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs751858	0.94[ASN][1000 genomes]
rs754255	0.81[ASN][1000 genomes]
rs769267	0.96[CEU][hapmap];0.89[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap];0.96[YRI][hapmap]
rs8103197	0.96[CEU][hapmap];0.96[YRI][hapmap]
rs892021	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs892022	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9917108	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	esv1828240	chr19:19591146-19900900	Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1063273	chr19:19591146-20061367	ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv911307	chr19:19631655-19657143	Bivalent Enhancer Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv911308	chr19:19631655-19663850	Strong transcription Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv1807343	chr19:19639345-19669570	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10422819	TM6SF2	cis	cerebellum	SCAN
rs10422819	GATAD2A	cis	parietal	SCAN
rs10422819	IL12RB1	cis	parietal	SCAN
rs10422819	DDX49	cis	cerebellum	SCAN

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19629000-19643600	Weak transcription	Small Intestine	intestine
2	chr19:19630600-19651800	Weak transcription	A549	lung
3	chr19:19631000-19647800	Weak transcription	HSMMtube	muscle
4	chr19:19635200-19649200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr19:19637800-19644400	Weak transcription	Fetal Heart	heart
6	chr19:19638400-19648800	Weak transcription	GM12878-XiMat	blood
7	chr19:19639000-19648600	Weak transcription	Aorta	Aorta
8	chr19:19639200-19643400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr19:19639200-19643400	Weak transcription	HepG2	liver
10	chr19:19639200-19648000	Weak transcription	Ovary	ovary
11	chr19:19639400-19643400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr19:19639400-19644800	Weak transcription	Fetal Intestine Large	intestine
13	chr19:19639400-19648200	Weak transcription	Primary B cells from cord blood	blood
14	chr19:19639600-19643400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr19:19639600-19648600	Weak transcription	NHLF	lung
16	chr19:19640400-19644800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr19:19640600-19643200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr19:19640600-19645200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr19:19640800-19643200	Weak transcription	Fetal Brain Female	brain
20	chr19:19640800-19643200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr19:19640800-19643400	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr19:19641000-19643200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr19:19641000-19643200	Weak transcription	Thymus	Thymus
24	chr19:19641000-19643400	Weak transcription	Brain Hippocampus Middle	brain
25	chr19:19641000-19643600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr19:19641000-19644000	Weak transcription	Fetal Lung	lung
27	chr19:19641000-19646200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr19:19641000-19648200	Weak transcription	Gastric	stomach
29	chr19:19641600-19644200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr19:19641800-19643600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr19:19642000-19643200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr19:19642000-19643800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr19:19642200-19643200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr19:19642200-19650600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr19:19642400-19648600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr19:19642800-19643200	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr19:19642800-19643200	Enhancers	Colonic Mucosa	Colon
38	chr19:19642800-19643200	Enhancers	Lung	lung
39	chr19:19642800-19643200	Enhancers	Placenta Amnion	Placenta Amnion
40	chr19:19642800-19643600	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr19:19642800-19643600	Enhancers	Primary B cells from peripheral blood	blood
42	chr19:19642800-19643600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr19:19642800-19643600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr19:19642800-19643600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr19:19642800-19643600	Enhancers	Brain Cingulate Gyrus	brain
46	chr19:19642800-19643600	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr19:19642800-19643600	Enhancers	Fetal Brain Male	brain
48	chr19:19642800-19643600	Genic enhancers	Fetal Muscle Trunk	muscle
49	chr19:19642800-19643600	Enhancers	Stomach Mucosa	stomach
50	chr19:19642800-19643600	Enhancers	Spleen	Spleen

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