Variant report

Variant	rs2074089
Chromosome Location	chr19:19449603-19449604
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:19449108-19449613	K562	blood:	n/a	n/a
2	POLR2A	chr19:19448889-19449689	HepG2	liver:	n/a	n/a
3	POLR2A	chr19:19449175-19449631	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:19443342..19445663-chr19:19448182..19449941,2	K562	blood:
2	chr19:19431266..19434636-chr19:19448982..19451713,3	MCF-7	breast:

Variant related genes	Relation type
MAU2	TF binding region
ENSG00000129933	Chromatin interaction
ENSG00000105705	Chromatin interaction

Extended variants
information (count: 140 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs1000237	0.92[CEU][hapmap]
rs1009136	0.94[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1010207	0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10282	0.96[CEU][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap]
rs10402661	0.91[ASN][1000 genomes]
rs10403731	0.94[ASN][1000 genomes]
rs10407952	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10409234	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10414830	0.96[CEU][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs10418051	0.91[ASN][1000 genomes]
rs10419245	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10419672	0.92[ASN][1000 genomes]
rs10419912	0.96[CEU][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs10421505	0.93[ASN][1000 genomes]
rs10422819	0.96[CEU][hapmap];0.86[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap]
rs10426780	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1054284	0.96[CEU][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.92[YRI][hapmap]
rs1063966	0.96[CEU][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap]
rs11085259	0.89[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs11085261	0.94[ASN][1000 genomes]
rs11666553	0.91[ASN][1000 genomes]
rs12459676	0.86[ASN][1000 genomes]
rs12460764	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12976025	0.88[ASN][1000 genomes]
rs12977937	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12982276	0.93[ASN][1000 genomes]
rs12983137	0.91[ASN][1000 genomes]
rs12985655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1469712	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1469713	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs15622	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1858999	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs1859287	0.89[CHB][hapmap];0.86[CHD][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs2017964	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2023882	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2023883	0.84[CHB][hapmap];0.86[CHD][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs2074090	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2074091	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2074296	0.83[CEU][hapmap];0.88[CHB][hapmap];0.82[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2074298	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2074299	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2074300	0.87[ASN][1000 genomes]
rs2074301	0.89[CHB][hapmap];0.81[CHD][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs2074303	0.81[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2074550	0.81[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2074551	0.82[ASN][1000 genomes]
rs2269873	0.81[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2285627	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2285628	0.89[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs2285859	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2288852	0.96[CEU][hapmap];0.96[YRI][hapmap]
rs2301668	0.89[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs2301669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2301671	0.94[ASN][1000 genomes]
rs2301784	0.92[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2301786	0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2304098	0.96[CEU][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap]
rs2315022	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2315025	0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2315279	0.88[AMR][1000 genomes]
rs2315281	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2315283	0.80[AMR][1000 genomes]
rs2315610	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs2905421	0.94[ASW][hapmap];0.96[CEU][hapmap];0.85[GIH][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2905423	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2905424	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2905425	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2905430	0.80[AMR][1000 genomes]
rs2905431	0.84[AMR][1000 genomes]
rs2916074	0.92[CEU][hapmap];0.97[LWK][hapmap];0.87[MEX][hapmap];0.90[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs2916076	0.92[CEU][hapmap];0.96[YRI][hapmap]
rs2965175	0.85[AMR][1000 genomes]
rs2965180	1.00[CEU][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs2965183	0.92[CEU][hapmap];0.96[YRI][hapmap]
rs2965185	0.84[CEU][hapmap];0.97[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs2965188	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2965189	0.92[CEU][hapmap];0.97[LWK][hapmap];0.87[MEX][hapmap];0.90[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs2965191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2965193	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2965198	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2965199	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34277109	1.00[CEU][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs34538000	0.82[AMR][1000 genomes]
rs35418933	0.81[AMR][1000 genomes]
rs3752151	0.96[CEU][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.92[YRI][hapmap]
rs3764567	0.96[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.89[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap]
rs3794990	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs3794993	0.96[CEU][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap]
rs3934667	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4808193	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4808194	0.93[ASN][1000 genomes]
rs4808200	1.00[CEU][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap]
rs4808203	0.96[CEU][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap]
rs4808931	0.80[MEX][hapmap];0.84[YRI][hapmap]
rs4808937	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4808938	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4808939	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4808940	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4808941	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4808942	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4808957	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs4808959	0.96[CEU][hapmap];0.92[YRI][hapmap]
rs4808961	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs4808964	0.96[CEU][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap]
rs4808965	0.96[CEU][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap]
rs4808967	0.96[CEU][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];0.95[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap]
rs62135552	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6511026	0.81[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6511028	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6511030	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6511032	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67720221	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6909	0.96[CEU][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap]
rs7246748	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7247309	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7250368	0.95[ASN][1000 genomes]
rs7254230	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7254748	0.92[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7254927	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7258508	0.87[ASN][1000 genomes]
rs7259434	0.89[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs735273	0.81[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs747050	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs757000	0.95[ASN][1000 genomes]
rs757001	0.94[ASN][1000 genomes]
rs769267	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8101938	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8103197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8103496	0.81[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8105094	0.81[CHD][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs8105984	0.84[CHB][hapmap];0.81[CHD][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs8108647	0.94[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs892021	0.91[CEU][hapmap];0.92[YRI][hapmap]
rs892022	0.96[CEU][hapmap];0.92[YRI][hapmap]
rs9304960	0.94[ASN][1000 genomes]
rs968525	0.89[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911303	chr19:19256870-19505087	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1056419	chr19:19421218-19510611	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2074089	TM6SF2	cis	cerebellum	SCAN
rs2074089	DDX49	cis	cerebellum	SCAN
rs2074089	IL12RB1	cis	parietal	SCAN
rs2074089	GATAD2A	cis	parietal	SCAN
rs2074089	RFXANK	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19433200-19452800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr19:19433400-19469800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:19433400-19470600	Strong transcription	Fetal Stomach	stomach
4	chr19:19433800-19468400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr19:19433800-19469800	Strong transcription	Fetal Intestine Large	intestine
6	chr19:19433800-19470400	Strong transcription	Placenta	Placenta
7	chr19:19434200-19469000	Strong transcription	Fetal Thymus	thymus
8	chr19:19434200-19469800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr19:19434200-19469800	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr19:19434400-19449800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr19:19434400-19450600	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr19:19434600-19466000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr19:19434800-19470600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr19:19435000-19471000	Strong transcription	Fetal Brain Female	brain
15	chr19:19435400-19453400	Strong transcription	Stomach Smooth Muscle	stomach
16	chr19:19435600-19455400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr19:19435600-19468600	Strong transcription	Dnd41	blood
18	chr19:19435600-19470400	Strong transcription	Brain Germinal Matrix	brain
19	chr19:19435600-19477600	Weak transcription	Fetal Heart	heart
20	chr19:19436000-19460600	Strong transcription	Brain Cingulate Gyrus	brain
21	chr19:19436800-19455600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr19:19438200-19450000	Strong transcription	Primary T cells from cord blood	blood
23	chr19:19438200-19469600	Strong transcription	Thymus	Thymus
24	chr19:19438400-19450000	Strong transcription	Brain Anterior Caudate	brain
25	chr19:19438400-19450600	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr19:19438600-19450000	Strong transcription	Placenta Amnion	Placenta Amnion
27	chr19:19438600-19460800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr19:19438800-19468800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr19:19439600-19461000	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr19:19439600-19469800	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr19:19439800-19453200	Strong transcription	Right Ventricle	heart
32	chr19:19440000-19449800	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr19:19440000-19470400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr19:19440200-19449800	Strong transcription	Brain Hippocampus Middle	brain
35	chr19:19440400-19450800	Strong transcription	Brain Substantia Nigra	brain
36	chr19:19440400-19468400	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr19:19440400-19468600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr19:19440400-19469000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr19:19440400-19469000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr19:19440400-19469200	Strong transcription	Lung	lung
41	chr19:19440400-19469400	Strong transcription	Liver	Liver
42	chr19:19440400-19475400	Weak transcription	Right Atrium	heart
43	chr19:19440600-19449800	Strong transcription	Primary B cells from cord blood	blood
44	chr19:19440600-19468400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr19:19440600-19468800	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr19:19440800-19450200	Strong transcription	Primary B cells from peripheral blood	blood
47	chr19:19440800-19468600	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr19:19440800-19470400	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr19:19440800-19470600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr19:19441200-19468600	Strong transcription	Primary T helper cells PMA-I stimulated	--

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