Variant report

Variant	rs735273
Chromosome Location	chr19:19385411-19385412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:19385272-19385430	HepG2	liver:	n/a	n/a
2	POLR2A	chr19:19385217-19386835	K562	blood:	n/a	n/a
3	POLR2A	chr19:19385353-19385512	GM12878	blood:	n/a	n/a
4	POLR2A	chr19:19385092-19386483	SK-N-MC	brain:	n/a	n/a
5	FOSL2	chr19:19385271-19386103	HepG2	liver:	n/a	n/a
6	POLR2A	chr19:19385160-19385447	HepG2	liver:	n/a	n/a
7	POLR2A	chr19:19385259-19386241	Hela-S3	cervix:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:19385393-19385443	NHBE	bronchial:	n/a
2	chr19:19385393-19385443	GM12891	blood:	n/a
3	chr19:19385393-19385443	HCT-116	colon:	n/a
4	chr19:19385393-19385443	K562	blood:	n/a
5	chr19:19385393-19385443	ECC-1	luminal epithelium:	n/a
6	chr19:19385393-19385443	HPAEpiC	pulmonary alveolar:	n/a
7	chr19:19385393-19385443	HCF	heart:	n/a
8	chr19:19385393-19385443	ProgFib	skin:	n/a
9	chr19:19385393-19385443	AoSMC	blood vessel:	n/a
10	chr19:19385393-19385443	GM12892	blood:	n/a
11	chr19:19385393-19385443	AG09319	gingival:	n/a
12	chr19:19385393-19385443	NT2-D1	testis:	n/a
13	chr19:19385393-19385443	HAEpiC	amniotic membrane:	n/a
14	chr19:19385393-19385443	HUVEC	blood vessel:	n/a
15	chr19:19385393-19385443	U87	brain:	n/a
16	chr19:19385393-19385443	SKMC	muscle:	n/a
17	chr19:19385393-19385443	Hela-S3	cervix:	n/a
18	chr19:19385393-19385443	RPTEC	kidney:	n/a
19	chr19:19385393-19385443	HMEC	breast:	n/a
20	chr19:19385393-19385443	PFSK-1	brain:	n/a
21	chr19:19385393-19385443	BJ	skin:	n/a
22	chr19:19385393-19385443	MCF-7	breast:	n/a
23	chr19:19385393-19385443	GM19239	blood:	n/a
24	chr19:19385393-19385443	Caco-2	colon:	n/a
25	chr19:19385393-19385443	HRCEpiC	kidney:	n/a
26	chr19:19385393-19385443	NHDF-neo	bronchial:	n/a
27	chr19:19385393-19385443	SK-N-SH	brain:	n/a
28	chr19:19385393-19385443	Hepatocyte	liver:	n/a
29	chr19:19385393-19385443	NH-A	brain:	n/a
30	chr19:19385393-19385443	AG04450	lung:	fetal
31	chr19:19385393-19385443	GM06990	blood:	n/a
32	chr19:19385393-19385443	PrEC	prostate:	n/a
33	chr19:19385393-19385443	SK-N-SH_RA	brain:	n/a
34	chr19:19385393-19385443	T-47D	breast:	n/a
35	chr19:19385393-19385443	H1-hESC	embryonic stem cell:	embryo
36	chr19:19385393-19385443	HRPEpiC	eye:	n/a
37	chr19:19385393-19385443	Jurkat	blood:	n/a
38	chr19:19385393-19385443	AG10803	skin:	n/a
39	chr19:19385393-19385443	CMK	blood:	n/a
40	chr19:19385393-19385443	SK-N-MC	brain:	n/a
41	chr19:19385393-19385443	HL-60	blood:	n/a
42	chr19:19385393-19385443	AG04449	skin:	fetal
43	chr19:19385393-19385443	PANC-1	pancreas:	n/a
44	chr19:19385393-19385443	IMR90	lung:	fetal
45	chr19:19385393-19385443	HIPEpiC	eye:	n/a
46	chr19:19385393-19385443	SAEC	small airway:	n/a
47	chr19:19385393-19385443	NB4	blood:	n/a
48	chr19:19385393-19385443	HepG2	liver:	n/a
49	chr19:19385393-19385443	HNPCEpiC	eye:	n/a
50	chr19:19385393-19385443	HCPEpiC	choroid plexus:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:19384577..19386203-chr19:19388312..19391208,2	MCF-7	breast:
2	chr19:19379140..19381298-chr19:19384434..19386732,2	K562	blood:
3	chr19:19302936..19305152-chr19:19382979..19386540,3	MCF-7	breast:

No data

Variant related genes	Relation type
TM6SF2	TF binding region
ENSG00000267629	TF binding region
ENSG00000267629	CpG island
TM6SF2	CpG island
ENSG00000064489	Chromatin interaction
ENSG00000064490	Chromatin interaction
ENSG00000254901	Chromatin interaction
ENSG00000213999	Chromatin interaction

Extended variants
information (count: 116 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs1000237	0.84[CEU][hapmap];0.80[JPT][hapmap]
rs1009136	0.88[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1010207	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10402661	0.84[ASN][1000 genomes]
rs10403731	0.82[ASN][1000 genomes]
rs10407952	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10409234	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10414830	0.87[CEU][hapmap];0.80[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];0.90[TSI][hapmap];0.92[YRI][hapmap]
rs10418051	0.95[ASN][1000 genomes]
rs10419245	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10419672	0.87[ASN][1000 genomes]
rs10421505	0.89[ASN][1000 genomes]
rs10426780	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11085259	0.95[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs11085261	0.82[ASN][1000 genomes]
rs11666553	0.87[ASN][1000 genomes]
rs12459676	0.85[ASN][1000 genomes]
rs12460764	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12976025	0.84[ASN][1000 genomes]
rs12977937	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12982276	0.89[ASN][1000 genomes]
rs12983137	0.87[ASN][1000 genomes]
rs12985655	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13964	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1469712	0.92[CEU][hapmap];0.80[JPT][hapmap];0.92[YRI][hapmap]
rs1469713	0.84[CEU][hapmap];0.80[JPT][hapmap];0.92[YRI][hapmap]
rs15622	0.81[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1858999	0.84[CEU][hapmap];0.80[JPT][hapmap];0.92[YRI][hapmap]
rs1859287	0.95[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2017964	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2023882	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2023883	0.89[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2074089	0.81[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2074090	0.81[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2074091	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2074296	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2074298	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2074299	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2074300	0.92[ASN][1000 genomes]
rs2074301	0.95[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2074303	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2074550	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2074551	0.92[ASN][1000 genomes]
rs2269873	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2285627	0.91[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2285628	0.95[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs2285859	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2301668	0.95[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs2301669	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2301671	0.82[ASN][1000 genomes]
rs2301784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2301786	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2315022	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2315025	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2315279	0.80[AMR][1000 genomes]
rs2315281	0.80[AMR][1000 genomes]
rs2905421	0.87[CEU][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap];0.88[EUR][1000 genomes]
rs2905423	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2905424	0.92[CEU][hapmap];0.90[CHB][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2905425	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2916074	0.84[CEU][hapmap];0.80[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.90[MKK][hapmap];0.88[TSI][hapmap];0.92[YRI][hapmap]
rs2916076	0.83[CEU][hapmap];0.80[JPT][hapmap];0.88[YRI][hapmap]
rs2965180	0.92[CEU][hapmap];0.80[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.90[TSI][hapmap];0.92[YRI][hapmap]
rs2965183	0.87[CEU][hapmap];0.80[JPT][hapmap];0.88[YRI][hapmap]
rs2965185	1.00[LWK][hapmap];0.84[MKK][hapmap];0.80[TSI][hapmap];0.92[YRI][hapmap]
rs2965188	0.92[CEU][hapmap];0.80[JPT][hapmap];0.92[YRI][hapmap]
rs2965189	0.84[CEU][hapmap];0.80[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.90[MKK][hapmap];0.88[TSI][hapmap];0.92[YRI][hapmap]
rs2965191	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2965193	0.81[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2965198	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2965199	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34277109	0.92[CEU][hapmap];0.80[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.92[YRI][hapmap]
rs3764567	0.88[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap]
rs3934667	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4808193	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4808194	0.85[ASN][1000 genomes]
rs4808200	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap]
rs4808203	0.87[CEU][hapmap];0.80[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap]
rs4808931	0.80[MEX][hapmap];0.92[YRI][hapmap]
rs4808937	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4808938	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4808939	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4808940	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4808941	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4808942	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4808957	0.87[CEU][hapmap];0.80[JPT][hapmap];0.92[YRI][hapmap]
rs4808959	0.87[CEU][hapmap];0.84[YRI][hapmap]
rs4808961	0.83[CEU][hapmap];0.80[JPT][hapmap];0.92[YRI][hapmap]
rs62135552	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6511026	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6511028	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6511032	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67720221	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7246748	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7247309	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7250368	0.83[ASN][1000 genomes]
rs7254230	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7254748	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7254927	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7259434	0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs747050	0.87[CEU][hapmap];0.80[JPT][hapmap];0.92[YRI][hapmap]
rs757000	0.83[ASN][1000 genomes]
rs757001	0.83[ASN][1000 genomes]
rs769267	0.92[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8101938	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8103197	0.92[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8103496	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8105094	0.84[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs8105984	0.89[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs8108647	1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs9304960	0.82[ASN][1000 genomes]
rs968525	0.95[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911303	chr19:19256870-19505087	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv911304	chr19:19303802-19408164	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv911306	chr19:19366643-19391838	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs735273	HAUS8	cis	parietal	SCAN
rs735273	IL12RB1	cis	parietal	SCAN
rs735273	GATAD2A	cis	parietal	SCAN
rs735273	UNC13A	cis	cerebellum	SCAN
rs735273	DDX49	cis	cerebellum	SCAN
rs735273	TM6SF2	cis	cerebellum	SCAN

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19381600-19385600	Weak transcription	Brain Angular Gyrus	brain
2	chr19:19381600-19387600	Weak transcription	K562	blood
3	chr19:19383800-19387000	Weak transcription	Brain Substantia Nigra	brain
4	chr19:19383800-19388400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:19384000-19387200	Weak transcription	GM12878-XiMat	blood
6	chr19:19384000-19388200	Weak transcription	HMEC	breast
7	chr19:19384200-19385800	Enhancers	Liver	Liver
8	chr19:19384200-19385800	Weak transcription	Left Ventricle	heart
9	chr19:19384200-19386200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr19:19384200-19386200	Weak transcription	Aorta	Aorta
11	chr19:19384200-19386400	Weak transcription	HSMM	muscle
12	chr19:19384200-19386400	Weak transcription	NHLF	lung
13	chr19:19384200-19386600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr19:19384200-19386600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr19:19384200-19387200	Weak transcription	A549	lung
16	chr19:19384200-19387200	Weak transcription	NH-A	brain
17	chr19:19384200-19387200	Weak transcription	Osteobl	bone
18	chr19:19384200-19387400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr19:19384400-19385600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr19:19384400-19385600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr19:19384400-19385600	Weak transcription	Pancreas	Pancrea
22	chr19:19384400-19385600	Weak transcription	Right Ventricle	heart
23	chr19:19384400-19385800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr19:19384400-19385800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr19:19384400-19385800	Weak transcription	Esophagus	oesophagus
26	chr19:19384400-19386000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr19:19384400-19386000	Weak transcription	Gastric	stomach
28	chr19:19384400-19386200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr19:19384400-19386200	Enhancers	Fetal Intestine Large	intestine
30	chr19:19384400-19386400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr19:19384400-19386400	Weak transcription	Colonic Mucosa	Colon
32	chr19:19384400-19386400	Weak transcription	Ovary	ovary
33	chr19:19384400-19386400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr19:19384400-19386600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr19:19384400-19386800	Genic enhancers	Fetal Intestine Small	intestine
36	chr19:19384400-19388400	Weak transcription	Psoas Muscle	Psoas
37	chr19:19384400-19391600	Weak transcription	Hela-S3	cervix
38	chr19:19384400-19392200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr19:19384400-19430600	Weak transcription	Right Atrium	heart
40	chr19:19384600-19385600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr19:19384600-19385600	Weak transcription	Brain Anterior Caudate	brain
42	chr19:19384600-19385600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr19:19384600-19385800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr19:19384600-19386000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr19:19384600-19386000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr19:19384600-19386000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr19:19384600-19386200	Enhancers	Fetal Lung	lung
48	chr19:19384600-19386200	Enhancers	HepG2	liver
49	chr19:19384600-19386400	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr19:19384600-19386400	Weak transcription	H9 Cell Line	embryonic stem cell

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