Variant report

Variant	rs1470345
Chromosome Location	chr1:211795078-211795079
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211777656..211789537-chr1:211792028..211798981,15	K562	blood:
2	chr1:211789684..211791521-chr1:211794844..211797087,2	K562	blood:
3	chr1:211793145..211800078-chr1:211800841..211805263,11	K562	blood:
4	chr1:211789857..211792626-chr1:211793343..211797405,3	MCF-7	breast:
5	chr1:211794683..211796296-chr1:211806280..211809015,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12724388	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12736496	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12751701	1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470344	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027226	0.80[EUR][1000 genomes]
rs2184844	1.00[JPT][hapmap]
rs35507775	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61851765	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61851769	0.84[ASN][1000 genomes]
rs6540693	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540694	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540695	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6659316	1.00[JPT][hapmap]
rs6664930	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6666442	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6673372	1.00[JPT][hapmap]
rs749964	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7511687	1.00[JPT][hapmap]
rs7516189	1.00[JPT][hapmap]
rs7521959	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7539988	1.00[JPT][hapmap]
rs7554588	1.00[JPT][hapmap]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211787000-211796800	Weak transcription	Gastric	stomach
2	chr1:211790400-211795200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:211790400-211796600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:211790400-211798400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:211790400-211803600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:211793400-211795200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:211793400-211795400	Enhancers	HepG2	liver
8	chr1:211793400-211796800	Weak transcription	Fetal Intestine Large	intestine
9	chr1:211793400-211803000	Weak transcription	Fetal Intestine Small	intestine
10	chr1:211794200-211796400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr1:211794400-211795200	Enhancers	Esophagus	oesophagus
12	chr1:211794400-211795400	Enhancers	Fetal Muscle Trunk	muscle
13	chr1:211794600-211795200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:211794600-211795200	Enhancers	Right Atrium	heart
15	chr1:211794600-211795400	Enhancers	Stomach Smooth Muscle	stomach
16	chr1:211794600-211795400	Enhancers	A549	lung
17	chr1:211794800-211795200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr1:211794800-211795200	Enhancers	Brain Anterior Caudate	brain
19	chr1:211794800-211795200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr1:211794800-211795200	Enhancers	Fetal Thymus	thymus
21	chr1:211794800-211795200	Enhancers	Left Ventricle	heart
22	chr1:211794800-211795200	Enhancers	Right Ventricle	heart
23	chr1:211794800-211795200	Enhancers	K562	blood
24	chr1:211795000-211795200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr1:211795000-211795200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:211795000-211795200	Bivalent Enhancer	Fetal Muscle Leg	muscle
27	chr1:211795000-211795200	Enhancers	Hela-S3	cervix
28	chr1:211795000-211795400	Enhancers	Spleen	Spleen
29	chr1:211795000-211795600	Enhancers	Adipose Nuclei	Adipose

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