Variant report

Variant	rs6666442
Chromosome Location	chr1:211798476-211798477
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211751184..211754739-chr1:211795904..211800461,6	K562	blood:
2	chr1:211777656..211789537-chr1:211792028..211798981,15	K562	blood:
3	chr1:211751146..211751864-chr1:211798100..211799087,3	K562	blood:
4	chr1:211793145..211800078-chr1:211800841..211805263,11	K562	blood:
5	chr1:211693758..211694545-chr1:211798120..211798669,2	MCF-7	breast:
6	chr1:211688497..211689073-chr1:211798450..211799183,2	MCF-7	breast:
7	chr1:211750781..211751639-chr1:211798078..211798633,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170385	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11119784	0.85[ASN][1000 genomes]
rs12724388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12736496	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12751701	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1470344	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1470345	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2027226	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2184844	1.00[JPT][hapmap]
rs34603396	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35507775	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4951537	0.86[CEU][hapmap]
rs61851765	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6540693	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6540694	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6540695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6659316	1.00[JPT][hapmap]
rs6664930	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673372	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs749964	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7511687	1.00[JPT][hapmap]
rs7516189	1.00[JPT][hapmap]
rs7516924	0.81[ASN][1000 genomes]
rs7521959	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539988	1.00[JPT][hapmap]
rs7554588	1.00[JPT][hapmap]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211790400-211803600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:211793400-211803000	Weak transcription	Fetal Intestine Small	intestine
3	chr1:211795200-211800000	Weak transcription	Left Ventricle	heart
4	chr1:211795200-211802400	Weak transcription	Right Atrium	heart
5	chr1:211795200-211803400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:211795400-211800200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:211796400-211798600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr1:211796600-211803600	Weak transcription	Spleen	Spleen
9	chr1:211797000-211800000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:211797200-211800400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:211798200-211798600	Enhancers	Hela-S3	cervix
12	chr1:211798200-211798600	Enhancers	HepG2	liver
13	chr1:211798400-211798600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:211798400-211798600	Enhancers	K562	blood
15	chr1:211798400-211798800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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