Variant report

Variant	rs11119784
Chromosome Location	chr1:211814964-211814965
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10158309	0.84[AMR][1000 genomes]
rs10158749	0.84[AMR][1000 genomes]
rs10158790	0.84[AMR][1000 genomes]
rs10158874	0.84[AMR][1000 genomes]
rs10159253	0.84[AMR][1000 genomes]
rs11119776	0.90[ASN][1000 genomes]
rs11119785	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11119794	1.00[CHB][hapmap]
rs11576789	0.90[MEX][hapmap];0.85[TSI][hapmap]
rs11578614	1.00[CHB][hapmap]
rs12074002	1.00[CHB][hapmap]
rs12086390	0.90[ASN][1000 genomes]
rs12142250	0.83[AMR][1000 genomes]
rs12561861	1.00[CHB][hapmap]
rs12724388	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12736496	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12751701	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs1373293	0.84[AMR][1000 genomes]
rs17017716	1.00[CHB][hapmap]
rs2184844	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2794731	1.00[CHB][hapmap]
rs34451435	0.85[EUR][1000 genomes]
rs34603396	1.00[ASN][1000 genomes]
rs61851769	0.95[ASN][1000 genomes]
rs6540695	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6540697	0.82[CEU][hapmap]
rs6659316	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6660850	0.82[CEU][hapmap]
rs6661565	1.00[CHB][hapmap]
rs6664930	0.85[ASN][1000 genomes]
rs6666442	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6669878	0.84[AMR][1000 genomes]
rs6673372	1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs701926	1.00[CHB][hapmap]
rs749964	0.85[ASN][1000 genomes]
rs7511687	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7516189	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7516924	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7521959	0.85[ASN][1000 genomes]
rs7526891	1.00[CHB][hapmap]
rs7527002	1.00[CHB][hapmap]
rs7539988	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7554588	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010919	chr1:211804252-211823073	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11119784	C1orf74	cis	parietal	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211804200-211816600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:211807000-211816200	Weak transcription	Colonic Mucosa	Colon
3	chr1:211807000-211816200	Weak transcription	Ovary	ovary
4	chr1:211807200-211816600	Weak transcription	Right Ventricle	heart
5	chr1:211807200-211817200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:211807400-211816800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:211807600-211816600	Weak transcription	Left Ventricle	heart
8	chr1:211810600-211816400	Weak transcription	Spleen	Spleen
9	chr1:211811400-211829600	Enhancers	Fetal Intestine Small	intestine
10	chr1:211811600-211815000	Enhancers	Liver	Liver
11	chr1:211811600-211828200	Enhancers	Fetal Intestine Large	intestine
12	chr1:211812400-211816600	Weak transcription	Adipose Nuclei	Adipose
13	chr1:211812600-211816600	Weak transcription	Esophagus	oesophagus
14	chr1:211813200-211816200	Weak transcription	Pancreas	Pancrea
15	chr1:211813200-211816400	Weak transcription	HMEC	breast
16	chr1:211813200-211816600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr1:211813200-211817000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr1:211813400-211816400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:211813600-211816200	Enhancers	HepG2	liver
20	chr1:211813600-211816600	Weak transcription	Placenta	Placenta
21	chr1:211813600-211817200	Weak transcription	HSMM	muscle
22	chr1:211813600-211821600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr1:211813800-211816000	Weak transcription	Fetal Thymus	thymus
24	chr1:211813800-211816200	Weak transcription	Stomach Mucosa	stomach
25	chr1:211813800-211816400	Weak transcription	A549	lung
26	chr1:211813800-211816600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr1:211813800-211816800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:211813800-211817000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:211813800-211822600	Weak transcription	NHDF-Ad	bronchial
30	chr1:211814000-211816000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr1:211814000-211816400	Weak transcription	Fetal Heart	heart
32	chr1:211814000-211816800	Weak transcription	HUVEC	blood vessel
33	chr1:211814000-211817000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:211814000-211817000	Weak transcription	Osteobl	bone
35	chr1:211814200-211816800	Weak transcription	NHLF	lung
36	chr1:211814400-211816200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr1:211814400-211816400	Weak transcription	NH-A	brain
38	chr1:211814600-211818600	Flanking Active TSS	Hela-S3	cervix

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