Variant report

Variant	rs749964
Chromosome Location	chr1:211801582-211801583
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211782443..211790536-chr1:211800686..211806134,8	K562	blood:
2	chr1:211793145..211800078-chr1:211800841..211805263,11	K562	blood:
3	chr1:211751862..211753388-chr1:211800934..211803854,2	K562	blood:

Variant related genes	Relation type
ENSG00000170385	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11119776	0.84[ASN][1000 genomes]
rs11119784	0.85[ASN][1000 genomes]
rs12086390	0.84[ASN][1000 genomes]
rs12724388	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12736496	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12751701	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1470344	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1470345	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34603396	0.85[ASN][1000 genomes]
rs35507775	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4951537	0.86[CEU][hapmap]
rs61851765	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61851769	0.89[ASN][1000 genomes]
rs6540693	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6540694	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6540695	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6663436	1.00[CHB][hapmap]
rs6664930	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6666442	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6673372	0.85[ASN][1000 genomes]
rs7516924	0.81[ASN][1000 genomes]
rs7521959	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211790400-211803600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:211793400-211803000	Weak transcription	Fetal Intestine Small	intestine
3	chr1:211795200-211802400	Weak transcription	Right Atrium	heart
4	chr1:211795200-211803400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:211796600-211803600	Weak transcription	Spleen	Spleen
6	chr1:211798600-211803800	Weak transcription	Hela-S3	cervix
7	chr1:211798800-211801800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:211800000-211802600	Enhancers	Fetal Muscle Leg	muscle
9	chr1:211800000-211807200	Enhancers	Fetal Heart	heart
10	chr1:211800200-211802600	Enhancers	Fetal Muscle Trunk	muscle
11	chr1:211800400-211802400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr1:211800800-211801800	Weak transcription	Brain Germinal Matrix	brain
13	chr1:211800800-211802600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:211800800-211803600	Weak transcription	Left Ventricle	heart
15	chr1:211801200-211802600	Enhancers	HSMMtube	muscle
16	chr1:211801400-211801600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr1:211801400-211802000	Weak transcription	K562	blood
18	chr1:211801400-211802600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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