Variant report

Variant	rs35507775
Chromosome Location	chr1:211796730-211796731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211751184..211754739-chr1:211795904..211800461,6	K562	blood:
2	chr1:211777656..211789537-chr1:211792028..211798981,15	K562	blood:
3	chr1:211789684..211791521-chr1:211794844..211797087,2	K562	blood:
4	chr1:211793145..211800078-chr1:211800841..211805263,11	K562	blood:
5	chr1:211789857..211792626-chr1:211793343..211797405,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170385	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12724388	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12736496	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12751701	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470344	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470345	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027226	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34603396	0.81[AMR][1000 genomes]
rs61851765	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61851769	0.84[ASN][1000 genomes]
rs6540693	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540694	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540695	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6664930	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6666442	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs749964	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7521959	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211787000-211796800	Weak transcription	Gastric	stomach
2	chr1:211790400-211798400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:211790400-211803600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:211793400-211796800	Weak transcription	Fetal Intestine Large	intestine
5	chr1:211793400-211803000	Weak transcription	Fetal Intestine Small	intestine
6	chr1:211795200-211798200	Weak transcription	Hela-S3	cervix
7	chr1:211795200-211800000	Weak transcription	Left Ventricle	heart
8	chr1:211795200-211802400	Weak transcription	Right Atrium	heart
9	chr1:211795200-211803400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:211795400-211798200	Weak transcription	HepG2	liver
11	chr1:211795400-211800200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr1:211796400-211797000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:211796400-211797800	Enhancers	Primary hematopoietic stem cells	blood
14	chr1:211796400-211797800	Enhancers	K562	blood
15	chr1:211796400-211798400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:211796400-211798600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr1:211796600-211797200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:211796600-211797400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr1:211796600-211798400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:211796600-211803600	Weak transcription	Spleen	Spleen

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