Variant report

Variant	rs1544861
Chromosome Location	chr11:10679441-10679442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10675148..10677906-chr11:10678421..10681418,4	MCF-7	breast:
2	chr11:10678901..10680801-chr11:10754781..10757131,2	MCF-7	breast:
3	chr11:10678917..10680760-chr11:10757378..10759987,2	K562	blood:
4	chr11:10679153..10681988-chr11:10698825..10701306,2	K562	blood:
5	chr11:10679397..10680975-chr11:10707592..10709737,2	K562	blood:
6	chr11:10679384..10682080-chr20:56827072..56828747,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1035691	1.00[JPT][hapmap]
rs10770131	0.90[ASN][1000 genomes]
rs10840453	0.87[AMR][1000 genomes]
rs10840457	1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11042902	1.00[JPT][hapmap]
rs11042906	0.84[AMR][1000 genomes]
rs11603178	1.00[JPT][hapmap]
rs1462940	1.00[JPT][hapmap]
rs16908001	1.00[JPT][hapmap]
rs16927077	1.00[JPT][hapmap]
rs17318955	1.00[JPT][hapmap]
rs17403175	1.00[JPT][hapmap]
rs17403439	1.00[JPT][hapmap]
rs17403460	1.00[JPT][hapmap]
rs17403795	1.00[JPT][hapmap]
rs17403942	1.00[JPT][hapmap]
rs17403977	1.00[JPT][hapmap]
rs1863243	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1863244	1.00[JPT][hapmap]
rs1979367	1.00[JPT][hapmap]
rs2052690	0.87[AMR][1000 genomes]
rs2052691	0.87[AMR][1000 genomes]
rs2052692	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2098839	0.95[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4025	1.00[JPT][hapmap]
rs41464450	1.00[JPT][hapmap]
rs4442541	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4909945	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4910160	1.00[JPT][hapmap]
rs4910165	0.83[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6484437	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7936275	0.81[AMR][1000 genomes]
rs7940646	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7947953	0.90[ASN][1000 genomes]
rs7951153	0.90[ASN][1000 genomes]
rs881869	1.00[JPT][hapmap]
rs903822	1.00[JPT][hapmap]
rs903823	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10673000-10682200	Enhancers	Placenta	Placenta
2	chr11:10673400-10682800	Enhancers	Ovary	ovary
3	chr11:10673800-10681400	Weak transcription	Pancreas	Pancrea
4	chr11:10674000-10681400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:10674200-10681800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:10674400-10681400	Enhancers	Fetal Muscle Leg	muscle
7	chr11:10674400-10681800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr11:10674600-10689600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:10675800-10680000	Weak transcription	Brain Angular Gyrus	brain
10	chr11:10676000-10683200	Enhancers	NHDF-Ad	bronchial
11	chr11:10676400-10683400	Genic enhancers	Fetal Stomach	stomach
12	chr11:10676600-10681600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:10676800-10679800	Enhancers	Fetal Intestine Large	intestine
14	chr11:10677000-10681800	Enhancers	HSMMtube	muscle
15	chr11:10677000-10682200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:10677000-10683400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:10677200-10682800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:10677400-10679800	Enhancers	Fetal Muscle Trunk	muscle
19	chr11:10677400-10680600	Genic enhancers	NHLF	lung
20	chr11:10677400-10680800	Enhancers	Small Intestine	intestine
21	chr11:10677400-10682200	Enhancers	Placenta Amnion	Placenta Amnion
22	chr11:10677400-10683000	Enhancers	Spleen	Spleen
23	chr11:10677600-10680600	Weak transcription	Primary B cells from cord blood	blood
24	chr11:10678000-10680200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:10678000-10680600	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:10678200-10681000	Enhancers	Colonic Mucosa	Colon
27	chr11:10678200-10681400	Enhancers	Lung	lung
28	chr11:10678200-10681600	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr11:10678200-10682000	Enhancers	Adipose Nuclei	Adipose
30	chr11:10678400-10679600	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr11:10678400-10679800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:10678400-10681400	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr11:10678400-10682200	Enhancers	Brain Anterior Caudate	brain
34	chr11:10678400-10682200	Enhancers	Esophagus	oesophagus
35	chr11:10678400-10682200	Enhancers	Right Atrium	heart
36	chr11:10678400-10682400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:10678400-10682600	Enhancers	Left Ventricle	heart
38	chr11:10678600-10680000	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr11:10678600-10680000	Flanking Active TSS	GM12878-XiMat	blood
40	chr11:10678600-10681600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:10678600-10681800	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr11:10678600-10682000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:10678600-10682200	Enhancers	Right Ventricle	heart
44	chr11:10678800-10679600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:10678800-10679600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:10678800-10679600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr11:10678800-10679800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr11:10678800-10680000	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr11:10678800-10680000	Enhancers	Primary B cells from peripheral blood	blood
50	chr11:10678800-10680000	Enhancers	Primary hematopoietic stem cells	blood

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