Variant report

Variant	rs7947953
Chromosome Location	chr11:10684060-10684061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10665534..10668459-chr11:10683707..10686559,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1035691	1.00[JPT][hapmap]
rs10770131	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840457	1.00[JPT][hapmap]
rs11042902	1.00[JPT][hapmap]
rs11603178	1.00[JPT][hapmap]
rs1390571	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1390575	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1462940	1.00[JPT][hapmap]
rs1544861	0.90[ASN][1000 genomes]
rs16908001	1.00[JPT][hapmap]
rs16927077	1.00[JPT][hapmap]
rs17318955	1.00[JPT][hapmap]
rs17403439	1.00[JPT][hapmap]
rs17403460	1.00[JPT][hapmap]
rs17403795	1.00[JPT][hapmap]
rs17403942	1.00[JPT][hapmap]
rs17403977	1.00[JPT][hapmap]
rs1863243	1.00[JPT][hapmap]
rs1863244	1.00[JPT][hapmap]
rs1863245	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1874443	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1874445	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1979367	1.00[JPT][hapmap]
rs2098839	1.00[JPT][hapmap]
rs4025	1.00[JPT][hapmap]
rs41464450	1.00[JPT][hapmap]
rs4442541	1.00[JPT][hapmap]
rs4909945	1.00[JPT][hapmap]
rs4910160	1.00[JPT][hapmap]
rs4910165	1.00[JPT][hapmap]
rs733534	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7940646	1.00[JPT][hapmap]
rs7951153	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs881869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs890115	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs903822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs903823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs903824	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10674600-10689600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:10680600-10696200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:10680800-10687200	Weak transcription	Small Intestine	intestine
4	chr11:10681000-10687800	Weak transcription	Brain Angular Gyrus	brain
5	chr11:10681000-10688800	Weak transcription	Colonic Mucosa	Colon
6	chr11:10681200-10685400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:10681200-10685800	Weak transcription	Psoas Muscle	Psoas
8	chr11:10681400-10685400	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:10681600-10685000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:10681600-10685400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr11:10681600-10685800	Weak transcription	Fetal Intestine Small	intestine
12	chr11:10681600-10689000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:10681800-10684200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:10681800-10684200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:10681800-10684400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:10682200-10684200	Weak transcription	Placenta	Placenta
17	chr11:10682200-10685000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:10682200-10685000	Weak transcription	Brain Anterior Caudate	brain
19	chr11:10682200-10685400	Weak transcription	Fetal Thymus	thymus
20	chr11:10682200-10685800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:10682200-10685800	Weak transcription	Esophagus	oesophagus
22	chr11:10682200-10687400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:10682200-10688200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:10682200-10690400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:10682400-10685800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:10682400-10687600	Weak transcription	Osteobl	bone
27	chr11:10682600-10684200	Weak transcription	Left Ventricle	heart
28	chr11:10682600-10684200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr11:10682600-10684600	Weak transcription	Brain Substantia Nigra	brain
30	chr11:10682600-10685400	Weak transcription	Adipose Nuclei	Adipose
31	chr11:10682600-10685400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr11:10682600-10685400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr11:10682600-10687800	Weak transcription	A549	lung
34	chr11:10682600-10687800	Weak transcription	Hela-S3	cervix
35	chr11:10682600-10688800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:10682800-10684200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:10682800-10684400	Weak transcription	Ovary	ovary
38	chr11:10682800-10685000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:10682800-10688200	Weak transcription	Right Atrium	heart
40	chr11:10683000-10685400	Weak transcription	Spleen	Spleen
41	chr11:10683000-10685800	Weak transcription	Right Ventricle	heart
42	chr11:10683000-10687800	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr11:10683200-10684200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:10683200-10685000	Weak transcription	NHDF-Ad	bronchial
45	chr11:10683200-10685600	Weak transcription	Lung	lung
46	chr11:10683200-10686200	Weak transcription	K562	blood
47	chr11:10683200-10687400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:10683400-10684200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:10683400-10684200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr11:10683400-10687600	Strong transcription	Fetal Stomach	stomach

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