Variant report

Variant	rs890115
Chromosome Location	chr11:10699696-10699697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10689241..10690956-chr11:10698574..10700529,2	K562	blood:
2	chr11:10679153..10681988-chr11:10698825..10701306,2	K562	blood:
3	chr11:10693377..10695565-chr11:10697509..10699957,3	K562	blood:
4	chr11:10692446..10695017-chr11:10698457..10700738,2	K562	blood:
5	chr11:10691286..10695244-chr11:10695981..10700197,4	MCF-7	breast:
6	chr11:10699670..10701263-chr11:10703402..10706052,2	K562	blood:
7	chr11:10699670..10701867-chr11:10703402..10705803,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1035691	1.00[JPT][hapmap];0.82[MEX][hapmap]
rs10770131	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10840457	1.00[JPT][hapmap]
rs11042902	1.00[JPT][hapmap]
rs11603178	1.00[JPT][hapmap]
rs1390571	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390575	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462940	1.00[JPT][hapmap]
rs16908001	1.00[JPT][hapmap]
rs16927077	1.00[JPT][hapmap]
rs17318955	1.00[JPT][hapmap]
rs17403439	1.00[JPT][hapmap]
rs17403460	1.00[JPT][hapmap]
rs17403795	1.00[JPT][hapmap]
rs17403942	1.00[JPT][hapmap]
rs17403977	1.00[JPT][hapmap]
rs1863243	1.00[JPT][hapmap]
rs1863244	1.00[JPT][hapmap]
rs1863245	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1874443	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1874445	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1979367	1.00[JPT][hapmap]
rs2098839	1.00[JPT][hapmap]
rs4025	1.00[JPT][hapmap]
rs41464450	1.00[JPT][hapmap]
rs4442541	1.00[JPT][hapmap]
rs4909945	1.00[JPT][hapmap]
rs4910160	1.00[JPT][hapmap]
rs4910165	1.00[JPT][hapmap]
rs733534	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940646	1.00[JPT][hapmap]
rs7947953	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7951153	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs881869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs903822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs903823	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs903824	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv2753762	chr11:10688217-10701438	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv7676	chr11:10689144-10734139	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs890115	OR6A2	cis	parietal	SCAN
rs890115	STK33	cis	parietal	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10696800-10702600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:10697000-10700800	Weak transcription	Fetal Lung	lung
3	chr11:10697000-10713200	Weak transcription	Gastric	stomach
4	chr11:10697200-10701000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:10697200-10713800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:10697200-10714000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:10697400-10704200	Weak transcription	Ovary	ovary
8	chr11:10697400-10708400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:10697600-10699800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:10697600-10700000	Weak transcription	Small Intestine	intestine
11	chr11:10697600-10700200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:10697600-10712000	Weak transcription	Brain Anterior Caudate	brain
13	chr11:10697600-10712000	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:10697800-10700800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:10697800-10701400	Genic enhancers	Aorta	Aorta
16	chr11:10697800-10709800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:10698000-10700600	Weak transcription	NHLF	lung
18	chr11:10698400-10707200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:10698600-10713800	Weak transcription	Lung	lung
20	chr11:10698800-10705000	Weak transcription	Left Ventricle	heart
21	chr11:10698800-10707400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:10698800-10710400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:10698800-10713800	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:10699000-10699800	Weak transcription	Fetal Stomach	stomach
25	chr11:10699000-10700800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:10699000-10700800	Weak transcription	Spleen	Spleen
27	chr11:10699200-10700000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:10699400-10699800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:10699400-10700600	Strong transcription	Colon Smooth Muscle	Colon
30	chr11:10699400-10705000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:10699600-10702600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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