Variant report

Variant	rs10770131
Chromosome Location	chr11:10682248-10682249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10674925..10678334-chr11:10679453..10682484,4	MCF-7	breast:
2	chr11:10681209..10682904-chr11:10735128..10737783,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1035691	1.00[JPT][hapmap];0.87[MEX][hapmap]
rs10840457	1.00[JPT][hapmap]
rs11042902	1.00[JPT][hapmap]
rs11603178	1.00[JPT][hapmap]
rs1390571	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1390575	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1462940	1.00[JPT][hapmap]
rs1544861	0.90[ASN][1000 genomes]
rs16908001	1.00[JPT][hapmap]
rs16927077	1.00[JPT][hapmap]
rs17318955	1.00[JPT][hapmap]
rs17403439	1.00[JPT][hapmap]
rs17403460	1.00[JPT][hapmap]
rs17403795	1.00[JPT][hapmap]
rs17403942	1.00[JPT][hapmap]
rs17403977	1.00[JPT][hapmap]
rs1863243	1.00[JPT][hapmap]
rs1863244	1.00[JPT][hapmap]
rs1863245	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1874443	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1874445	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1979367	1.00[JPT][hapmap]
rs2098839	1.00[JPT][hapmap]
rs4025	1.00[JPT][hapmap]
rs41464450	1.00[JPT][hapmap]
rs4442541	1.00[JPT][hapmap]
rs4909945	1.00[JPT][hapmap]
rs4910160	1.00[JPT][hapmap]
rs4910165	1.00[JPT][hapmap]
rs733534	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7940646	1.00[JPT][hapmap]
rs7947953	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951153	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs881869	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs890115	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs903822	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs903823	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs903824	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10770131	STK33	cis	parietal	SCAN

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10673400-10682800	Enhancers	Ovary	ovary
2	chr11:10674600-10689600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:10676000-10683200	Enhancers	NHDF-Ad	bronchial
4	chr11:10676400-10683400	Genic enhancers	Fetal Stomach	stomach
5	chr11:10677000-10683400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:10677200-10682800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:10677400-10683000	Enhancers	Spleen	Spleen
8	chr11:10678400-10682400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:10678400-10682600	Enhancers	Left Ventricle	heart
10	chr11:10678800-10682400	Enhancers	HSMM	muscle
11	chr11:10678800-10683000	Enhancers	HUVEC	blood vessel
12	chr11:10679400-10683200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:10679600-10682400	Enhancers	NH-A	brain
14	chr11:10679600-10683400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:10679600-10683400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:10679800-10683200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:10679800-10683400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr11:10680000-10682600	Enhancers	Rectal Smooth Muscle	rectum
19	chr11:10680200-10682400	Enhancers	Osteobl	bone
20	chr11:10680200-10682600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:10680600-10682800	Enhancers	Aorta	Aorta
22	chr11:10680600-10683600	Enhancers	NHLF	lung
23	chr11:10680600-10696200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:10680800-10683400	Enhancers	Colon Smooth Muscle	Colon
25	chr11:10680800-10687200	Weak transcription	Small Intestine	intestine
26	chr11:10681000-10687800	Weak transcription	Brain Angular Gyrus	brain
27	chr11:10681000-10688800	Weak transcription	Colonic Mucosa	Colon
28	chr11:10681200-10682400	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:10681200-10683000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr11:10681200-10683200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:10681200-10685400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr11:10681200-10685800	Weak transcription	Psoas Muscle	Psoas
33	chr11:10681400-10683200	Enhancers	K562	blood
34	chr11:10681400-10685400	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:10681600-10682600	Enhancers	A549	lung
36	chr11:10681600-10683800	Enhancers	Stomach Smooth Muscle	stomach
37	chr11:10681600-10684000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:10681600-10685000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:10681600-10685400	Weak transcription	Primary B cells from peripheral blood	blood
40	chr11:10681600-10685800	Weak transcription	Fetal Intestine Small	intestine
41	chr11:10681600-10689000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr11:10681800-10682600	Enhancers	Hela-S3	cervix
43	chr11:10681800-10683200	Enhancers	Lung	lung
44	chr11:10681800-10684200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr11:10681800-10684200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:10681800-10684400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr11:10682000-10682400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:10682000-10682400	Weak transcription	Adipose Nuclei	Adipose
49	chr11:10682000-10682600	Enhancers	Brain Substantia Nigra	brain
50	chr11:10682000-10682600	Enhancers	Fetal Muscle Trunk	muscle

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