Variant report

Variant	rs1580429
Chromosome Location	chr8:107710800-107710801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1080965	0.81[AMR][1000 genomes]
rs1552302	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1580428	0.87[CEU][hapmap];0.91[GIH][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1676418	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1676419	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1681881	0.87[CEU][hapmap]
rs1681887	0.87[CEU][hapmap]
rs1784468	0.81[AMR][1000 genomes]
rs1784470	0.87[CEU][hapmap];0.81[AMR][1000 genomes]
rs1784476	0.81[AMR][1000 genomes]
rs1784478	0.87[CEU][hapmap];0.81[AMR][1000 genomes]
rs1784489	0.81[EUR][1000 genomes]
rs1784493	0.87[CEU][hapmap];0.91[GIH][hapmap];0.90[TSI][hapmap]
rs702776	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs763904	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs776935	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs776936	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs776937	0.87[CEU][hapmap];0.81[AMR][1000 genomes]
rs776942	0.87[CEU][hapmap];0.91[GIH][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs776943	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs776952	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs776953	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs776956	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs776957	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs776958	0.82[EUR][1000 genomes]
rs776964	0.81[EUR][1000 genomes]
rs776966	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776967	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs776968	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs812907	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs936737	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107672200-107718800	Weak transcription	Psoas Muscle	Psoas
2	chr8:107672400-107718600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:107677600-107718800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr8:107679200-107738200	Weak transcription	Right Ventricle	heart
5	chr8:107681200-107730200	Weak transcription	Small Intestine	intestine
6	chr8:107683800-107718800	Weak transcription	Hela-S3	cervix
7	chr8:107686600-107711800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:107688000-107713000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:107688600-107718600	Weak transcription	Stomach Mucosa	stomach
10	chr8:107690200-107730600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr8:107691600-107718600	Weak transcription	K562	blood
12	chr8:107692000-107738400	Weak transcription	Colon Smooth Muscle	Colon
13	chr8:107692800-107725800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:107694600-107719000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr8:107694600-107738000	Weak transcription	Fetal Heart	heart
16	chr8:107695000-107725800	Weak transcription	NHLF	lung
17	chr8:107695800-107718600	Weak transcription	NHEK	skin
18	chr8:107696000-107718800	Weak transcription	A549	lung
19	chr8:107696000-107737200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:107696200-107718800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr8:107697800-107718400	Weak transcription	HUVEC	blood vessel
22	chr8:107697800-107718800	Weak transcription	Osteobl	bone
23	chr8:107697800-107719000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr8:107697800-107723800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr8:107698000-107718600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr8:107698000-107718600	Weak transcription	NH-A	brain
27	chr8:107698000-107719000	Weak transcription	Fetal Kidney	kidney
28	chr8:107698000-107723000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr8:107698200-107718600	Weak transcription	HepG2	liver
30	chr8:107698200-107718800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr8:107698200-107718800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr8:107698200-107718800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr8:107698200-107731000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr8:107698400-107718600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr8:107698400-107718600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr8:107698400-107718800	Weak transcription	HSMM	muscle
37	chr8:107699400-107718800	Weak transcription	NHDF-Ad	bronchial
38	chr8:107701400-107717400	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr8:107703000-107712000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr8:107705400-107718600	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr8:107705400-107718600	Weak transcription	HMEC	breast
42	chr8:107705400-107718800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr8:107706000-107718600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr8:107706000-107723600	Weak transcription	Brain Anterior Caudate	brain
45	chr8:107706600-107718600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr8:107707400-107712200	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr8:107707800-107723600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr8:107707800-107737800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr8:107708000-107711000	Strong transcription	Liver	Liver
50	chr8:107708000-107711400	Strong transcription	Primary T helper cells fromperipheralblood	blood

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