Variant report

Variant	rs1552302
Chromosome Location	chr8:107775072-107775073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107774648..107776061-chr8:107868448..107869328,4	K562	blood:
2	chr8:107774909..107775928-chr8:107868574..107869326,4	MCF-7	breast:
3	chr8:107774998..107776443-chr8:107844921..107846410,11	MCF-7	breast:
4	chr8:107774167..107775128-chr8:107845360..107846184,2	K562	blood:
5	chr8:107770129..107772071-chr8:107772646..107775395,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1080965	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1580428	0.81[AMR][1000 genomes]
rs1580429	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1676418	0.81[AMR][1000 genomes]
rs1676419	0.81[AMR][1000 genomes]
rs1681881	0.81[EUR][1000 genomes]
rs1784468	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1784470	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1784476	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1784478	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1784484	0.81[EUR][1000 genomes]
rs1784485	0.81[EUR][1000 genomes]
rs702776	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs763904	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs776935	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs776936	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs776937	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs776942	0.81[AMR][1000 genomes]
rs776943	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs776952	0.81[AMR][1000 genomes]
rs776953	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs776956	0.81[AMR][1000 genomes]
rs776957	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs776966	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs776967	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs776968	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs812907	0.81[AMR][1000 genomes]
rs936737	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs959301	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1032991	chr8:107756661-107819035	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107719600-107775200	Weak transcription	Gastric	stomach
2	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
3	chr8:107739000-107775200	Weak transcription	A549	lung
4	chr8:107740000-107775200	Weak transcription	Ovary	ovary
5	chr8:107740200-107783800	Weak transcription	Fetal Brain Male	brain
6	chr8:107740800-107775200	Weak transcription	Brain Substantia Nigra	brain
7	chr8:107749400-107775200	Weak transcription	HMEC	breast
8	chr8:107753600-107777400	Weak transcription	HUVEC	blood vessel
9	chr8:107753800-107775200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:107754200-107775200	Weak transcription	Pancreas	Pancrea
11	chr8:107754800-107775200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr8:107755800-107777800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr8:107756400-107777800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr8:107756600-107775200	Weak transcription	Brain Angular Gyrus	brain
15	chr8:107756600-107775200	Weak transcription	Brain Anterior Caudate	brain
16	chr8:107756600-107775200	Weak transcription	Fetal Intestine Large	intestine
17	chr8:107756600-107775200	Weak transcription	Fetal Kidney	kidney
18	chr8:107756600-107775200	Weak transcription	Fetal Muscle Leg	muscle
19	chr8:107756600-107775200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr8:107756600-107777400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:107756600-107777400	Weak transcription	Psoas Muscle	Psoas
22	chr8:107756600-107777600	Weak transcription	Fetal Brain Female	brain
23	chr8:107756800-107775200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr8:107756800-107775200	Weak transcription	Osteobl	bone
25	chr8:107757200-107775200	Weak transcription	NHDF-Ad	bronchial
26	chr8:107759800-107775200	Weak transcription	Fetal Thymus	thymus
27	chr8:107760200-107775800	Weak transcription	Right Ventricle	heart
28	chr8:107761400-107777600	Weak transcription	Fetal Stomach	stomach
29	chr8:107761600-107775200	Weak transcription	Fetal Intestine Small	intestine
30	chr8:107761600-107775600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:107764400-107775200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr8:107764400-107775200	Weak transcription	Liver	Liver
33	chr8:107764400-107775200	Weak transcription	Colon Smooth Muscle	Colon
34	chr8:107764400-107775200	Weak transcription	Duodenum Mucosa	Duodenum
35	chr8:107764600-107775200	Weak transcription	Fetal Lung	lung
36	chr8:107765400-107777200	Weak transcription	HSMM	muscle
37	chr8:107765600-107775200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr8:107768000-107775200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr8:107768000-107775200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr8:107768200-107775200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr8:107768400-107775200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr8:107768400-107775200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr8:107768400-107775200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr8:107769200-107775200	Weak transcription	Adipose Nuclei	Adipose
45	chr8:107770200-107775200	Weak transcription	Brain Hippocampus Middle	brain
46	chr8:107771200-107776200	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr8:107771400-107775200	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr8:107772600-107775200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr8:107772600-107775200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr8:107772600-107775200	Weak transcription	Rectal Mucosa Donor 31	rectum

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