Variant report

Variant	rs812907
Chromosome Location	chr8:107722047-107722048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1080965	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1552302	0.81[AMR][1000 genomes]
rs1580428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1580429	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1676418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1676419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681881	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1681887	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875004	1.00[YRI][hapmap]
rs1784468	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784476	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1784478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1784484	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1784485	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1784489	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035516	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs702777	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72682834	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs763904	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs776935	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs776943	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs776952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776953	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs776956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776957	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs776958	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776964	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776966	0.87[CEU][hapmap]
rs776967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs936737	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs959301	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107679200-107738200	Weak transcription	Right Ventricle	heart
2	chr8:107681200-107730200	Weak transcription	Small Intestine	intestine
3	chr8:107690200-107730600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:107692000-107738400	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:107692800-107725800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:107694600-107738000	Weak transcription	Fetal Heart	heart
7	chr8:107695000-107725800	Weak transcription	NHLF	lung
8	chr8:107696000-107737200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:107697800-107723800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr8:107698000-107723000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:107698200-107731000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr8:107706000-107723600	Weak transcription	Brain Anterior Caudate	brain
13	chr8:107707800-107723600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr8:107707800-107737800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr8:107708800-107725600	Weak transcription	Fetal Brain Male	brain
16	chr8:107710000-107723800	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:107710200-107722800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr8:107710400-107724600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:107710400-107725400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:107710400-107735600	Weak transcription	Fetal Intestine Small	intestine
21	chr8:107710400-107738200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr8:107710400-107755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:107711800-107738200	Weak transcription	Brain Angular Gyrus	brain
24	chr8:107717200-107737200	Weak transcription	Brain Hippocampus Middle	brain
25	chr8:107717800-107726000	Weak transcription	Brain Substantia Nigra	brain
26	chr8:107718000-107728600	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr8:107718600-107723800	Strong transcription	Primary hematopoietic stem cells	blood
28	chr8:107718600-107726400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:107718600-107727600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr8:107718800-107723800	Strong transcription	Primary B cells from peripheral blood	blood
31	chr8:107719000-107738200	Weak transcription	NHEK	skin
32	chr8:107719200-107725400	Weak transcription	Pancreas	Pancrea
33	chr8:107719200-107742400	Weak transcription	Stomach Mucosa	stomach
34	chr8:107719400-107723400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr8:107719400-107723800	Weak transcription	A549	lung
36	chr8:107719400-107723800	Weak transcription	NH-A	brain
37	chr8:107719400-107725400	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr8:107719600-107722200	Weak transcription	NHDF-Ad	bronchial
39	chr8:107719600-107722800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr8:107719600-107722800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr8:107719600-107722800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr8:107719600-107722800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr8:107719600-107722800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr8:107719600-107722800	Weak transcription	K562	blood
45	chr8:107719600-107723000	Weak transcription	HSMM	muscle
46	chr8:107719600-107723800	Weak transcription	HUVEC	blood vessel
47	chr8:107719600-107725400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr8:107719600-107726200	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr8:107719600-107729800	Weak transcription	Spleen	Spleen
50	chr8:107719600-107731000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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