Variant report

Variant	rs1784478
Chromosome Location	chr8:107776450-107776451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107775742..107777895-chr8:107793732..107796183,2	MCF-7	breast:
2	chr22:20745968..20748924-chr8:107775858..107777888,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185252	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1080965	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1552302	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1580428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1580429	0.87[CEU][hapmap];0.81[AMR][1000 genomes]
rs1676418	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1676419	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1681881	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1681887	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs16875004	1.00[YRI][hapmap]
rs1784468	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1784470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1784476	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1784484	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1784485	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1784489	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1784493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2035516	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs702777	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72682834	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs763904	0.81[AMR][1000 genomes]
rs776935	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs776936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs776937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs776942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs776943	0.87[CEU][hapmap]
rs776952	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs776953	0.81[AMR][1000 genomes]
rs776956	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs776957	0.81[AMR][1000 genomes]
rs776958	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs776964	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs776966	0.87[CEU][hapmap]
rs776967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs776968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs812907	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs936737	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs959301	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1032991	chr8:107756661-107819035	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
2	chr8:107740200-107783800	Weak transcription	Fetal Brain Male	brain
3	chr8:107753600-107777400	Weak transcription	HUVEC	blood vessel
4	chr8:107755800-107777800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr8:107756400-107777800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:107756600-107777400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:107756600-107777400	Weak transcription	Psoas Muscle	Psoas
8	chr8:107756600-107777600	Weak transcription	Fetal Brain Female	brain
9	chr8:107761400-107777600	Weak transcription	Fetal Stomach	stomach
10	chr8:107765400-107777200	Weak transcription	HSMM	muscle
11	chr8:107772600-107777400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:107775400-107777400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:107775400-107777400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:107775400-107777400	Weak transcription	Brain Angular Gyrus	brain
15	chr8:107775400-107777400	Weak transcription	Left Ventricle	heart
16	chr8:107775600-107777400	Weak transcription	Stomach Mucosa	stomach
17	chr8:107775800-107777400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:107775800-107777400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr8:107775800-107777400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr8:107775800-107777400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr8:107775800-107777400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr8:107775800-107777400	Weak transcription	Fetal Intestine Large	intestine
23	chr8:107775800-107777400	Weak transcription	NHLF	lung
24	chr8:107775800-107777400	Weak transcription	Osteobl	bone
25	chr8:107776000-107777000	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr8:107776000-107777200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr8:107776000-107777200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:107776000-107777200	Weak transcription	Liver	Liver
29	chr8:107776000-107777200	Weak transcription	Fetal Heart	heart
30	chr8:107776000-107777200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr8:107776000-107777200	Weak transcription	Right Atrium	heart
32	chr8:107776000-107777400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr8:107776000-107777400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr8:107776000-107777400	Weak transcription	Adipose Nuclei	Adipose
35	chr8:107776000-107777400	Weak transcription	Brain Anterior Caudate	brain
36	chr8:107776000-107777400	Weak transcription	Brain Hippocampus Middle	brain
37	chr8:107776000-107777400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr8:107776000-107777400	Weak transcription	Brain Substantia Nigra	brain
39	chr8:107776000-107777400	Weak transcription	Colon Smooth Muscle	Colon
40	chr8:107776000-107777400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr8:107776000-107777400	Weak transcription	Fetal Kidney	kidney
42	chr8:107776000-107777400	Weak transcription	Fetal Muscle Leg	muscle
43	chr8:107776000-107777400	Weak transcription	Ovary	ovary
44	chr8:107776000-107777400	Weak transcription	Right Ventricle	heart
45	chr8:107776000-107777400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr8:107776000-107777600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr8:107776000-107777800	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr8:107776000-107785000	Weak transcription	HSMMtube	muscle
49	chr8:107776200-107776600	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr8:107776200-107776800	Enhancers	Skeletal Muscle Female	skeletal muscle

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