Variant report

Variant	rs776967
Chromosome Location	chr8:107742092-107742093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1080965	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1552302	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1580428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1580429	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1676418	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1676419	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681881	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1681887	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875004	1.00[YRI][hapmap]
rs1784468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1784478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1784484	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1784485	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1784489	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035516	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs702777	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72682834	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs763904	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs776935	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs776943	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs776952	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776953	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs776956	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776957	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs776958	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776964	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776966	0.87[CEU][hapmap]
rs776968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs812907	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs936737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs959301	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107710400-107755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107719200-107742400	Weak transcription	Stomach Mucosa	stomach
3	chr8:107719600-107762400	Weak transcription	Lung	lung
4	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
5	chr8:107719600-107775200	Weak transcription	Gastric	stomach
6	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
7	chr8:107719800-107753800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr8:107724800-107751400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr8:107731600-107748400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr8:107733000-107751200	Weak transcription	HepG2	liver
11	chr8:107734200-107750600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:107736200-107751600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr8:107737200-107748600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr8:107737200-107750000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr8:107738000-107755400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:107738600-107751600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr8:107738600-107755400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr8:107738600-107755400	Weak transcription	Fetal Intestine Small	intestine
19	chr8:107738800-107742600	Weak transcription	Primary B cells from cord blood	blood
20	chr8:107738800-107747800	Weak transcription	GM12878-XiMat	blood
21	chr8:107738800-107751400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr8:107738800-107757000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:107739000-107742400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:107739000-107742600	Weak transcription	NHEK	skin
25	chr8:107739000-107752600	Weak transcription	Fetal Intestine Large	intestine
26	chr8:107739000-107753000	Weak transcription	Colon Smooth Muscle	Colon
27	chr8:107739000-107754200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr8:107739000-107758000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:107739000-107775200	Weak transcription	A549	lung
30	chr8:107739200-107742800	Weak transcription	NHDF-Ad	bronchial
31	chr8:107739200-107746200	Weak transcription	Adipose Nuclei	Adipose
32	chr8:107739200-107748400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr8:107739200-107751600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr8:107739200-107752000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr8:107739200-107752600	Weak transcription	Fetal Kidney	kidney
36	chr8:107739200-107752600	Weak transcription	Fetal Thymus	thymus
37	chr8:107739200-107753200	Weak transcription	NHLF	lung
38	chr8:107739200-107760800	Weak transcription	Fetal Stomach	stomach
39	chr8:107739400-107742600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr8:107739400-107746600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr8:107739600-107751600	Weak transcription	Liver	Liver
42	chr8:107739800-107748200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr8:107740000-107742200	Weak transcription	Right Atrium	heart
44	chr8:107740000-107742600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr8:107740000-107747400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr8:107740000-107748200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr8:107740000-107748200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr8:107740000-107751600	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr8:107740000-107751600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr8:107740000-107751600	Weak transcription	Left Ventricle	heart

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