Variant report

Variant	rs1681881
Chromosome Location	chr8:107786806-107786807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1080965	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1552302	0.81[EUR][1000 genomes]
rs1580428	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1580429	0.87[CEU][hapmap]
rs1676418	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1676419	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1681887	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs16875004	1.00[YRI][hapmap]
rs1784468	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1784470	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1784476	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1784478	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1784484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784489	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1784493	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2035516	0.88[EUR][1000 genomes]
rs702777	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72682834	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs776935	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs776936	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs776937	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs776942	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs776943	0.87[CEU][hapmap]
rs776952	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs776956	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs776958	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs776964	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs776966	0.87[CEU][hapmap]
rs776967	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs776968	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs812907	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs936737	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs959301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1032991	chr8:107756661-107819035	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611846	chr8:107778324-107819368	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107783200-107798400	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:107785400-107789800	Weak transcription	Psoas Muscle	Psoas
3	chr8:107785400-107790000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr8:107785600-107790400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:107785800-107790000	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links