Variant report

Variant	rs959301
Chromosome Location	chr8:107790203-107790204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107789517..107792375-chr8:107794903..107797817,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1080965	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1552302	0.81[EUR][1000 genomes]
rs1580428	1.00[CEU][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1580429	0.87[CEU][hapmap];0.86[GIH][hapmap];0.82[TSI][hapmap]
rs1676418	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1676419	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1681881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681887	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs16875004	0.85[LWK][hapmap];1.00[YRI][hapmap]
rs1784468	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1784470	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1784476	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1784478	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1784484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784489	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1784493	1.00[CEU][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2035516	0.88[EUR][1000 genomes]
rs702777	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72682834	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs776935	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs776936	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs776937	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs776942	1.00[CEU][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs776943	0.87[CEU][hapmap]
rs776952	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs776956	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs776958	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs776964	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs776966	0.87[CEU][hapmap];0.86[GIH][hapmap];0.82[TSI][hapmap]
rs776967	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs776968	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs812907	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs936737	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1032991	chr8:107756661-107819035	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611846	chr8:107778324-107819368	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs959301	TMEM74	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107783200-107798400	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:107785600-107790400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:107789800-107791600	Enhancers	Psoas Muscle	Psoas
4	chr8:107790000-107791200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr8:107790000-107791600	Enhancers	Fetal Heart	heart
6	chr8:107790200-107791200	Enhancers	NHEK	skin
7	chr8:107790200-107791400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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