Variant report

Variant	rs1676419
Chromosome Location	chr8:107712363-107712364
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107686163..107688960-chr8:107711945..107714088,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1080965	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1552302	0.81[AMR][1000 genomes]
rs1580428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1580429	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1676418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681881	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1681887	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784468	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784470	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784476	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1784478	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1784484	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1784485	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1784489	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784493	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035516	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs702777	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72682834	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs763904	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs776935	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776936	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776937	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs776943	0.82[EUR][1000 genomes]
rs776952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776953	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs776956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776957	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs776958	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776964	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776966	0.81[EUR][1000 genomes]
rs776967	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776968	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs812907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs936737	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs959301	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107672200-107718800	Weak transcription	Psoas Muscle	Psoas
2	chr8:107672400-107718600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:107677600-107718800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr8:107679200-107738200	Weak transcription	Right Ventricle	heart
5	chr8:107681200-107730200	Weak transcription	Small Intestine	intestine
6	chr8:107683800-107718800	Weak transcription	Hela-S3	cervix
7	chr8:107688000-107713000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:107688600-107718600	Weak transcription	Stomach Mucosa	stomach
9	chr8:107690200-107730600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr8:107691600-107718600	Weak transcription	K562	blood
11	chr8:107692000-107738400	Weak transcription	Colon Smooth Muscle	Colon
12	chr8:107692800-107725800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:107694600-107719000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr8:107694600-107738000	Weak transcription	Fetal Heart	heart
15	chr8:107695000-107725800	Weak transcription	NHLF	lung
16	chr8:107695800-107718600	Weak transcription	NHEK	skin
17	chr8:107696000-107718800	Weak transcription	A549	lung
18	chr8:107696000-107737200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr8:107696200-107718800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr8:107697800-107718400	Weak transcription	HUVEC	blood vessel
21	chr8:107697800-107718800	Weak transcription	Osteobl	bone
22	chr8:107697800-107719000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr8:107697800-107723800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr8:107698000-107718600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr8:107698000-107718600	Weak transcription	NH-A	brain
26	chr8:107698000-107719000	Weak transcription	Fetal Kidney	kidney
27	chr8:107698000-107723000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr8:107698200-107718600	Weak transcription	HepG2	liver
29	chr8:107698200-107718800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr8:107698200-107718800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr8:107698200-107718800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr8:107698200-107731000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr8:107698400-107718600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr8:107698400-107718600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr8:107698400-107718800	Weak transcription	HSMM	muscle
36	chr8:107699400-107718800	Weak transcription	NHDF-Ad	bronchial
37	chr8:107701400-107717400	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr8:107705400-107718600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr8:107705400-107718600	Weak transcription	HMEC	breast
40	chr8:107705400-107718800	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr8:107706000-107718600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr8:107706000-107723600	Weak transcription	Brain Anterior Caudate	brain
43	chr8:107706600-107718600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr8:107707800-107723600	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr8:107707800-107737800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr8:107708200-107714000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr8:107708800-107725600	Weak transcription	Fetal Brain Male	brain
48	chr8:107709000-107718600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr8:107710000-107718200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr8:107710000-107718800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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