Variant report

Variant	rs158154
Chromosome Location	chr5:57734389-57734390
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57734277..57735805-chr5:57753094..57755765,2	MCF-7	breast:
2	chr5:57722619..57725574-chr5:57732992..57735814,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs149132	0.88[ASN][1000 genomes]
rs150249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs151890	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151892	0.88[ASN][1000 genomes]
rs151893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs154472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154490	0.88[ASN][1000 genomes]
rs154491	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154492	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs154493	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs158150	0.81[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs158152	0.84[ASN][1000 genomes]
rs158153	0.84[ASN][1000 genomes]
rs158158	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158159	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158160	0.88[ASN][1000 genomes]
rs158280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs158281	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888143	0.84[AFR][1000 genomes]
rs173450	0.88[ASN][1000 genomes]
rs32614	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs32616	0.82[ASN][1000 genomes]
rs39967	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41088	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4146755	0.84[AFR][1000 genomes]
rs42739	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs42740	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs697134	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs702709	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs702720	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs832631	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs832636	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57732400-57734800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:57733600-57734400	Enhancers	Pancreas	Pancrea
3	chr5:57734200-57736000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links