Variant report

Variant	rs173450
Chromosome Location	chr5:57737783-57737784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57736186..57738173-chr5:57743943..57745504,2	MCF-7	breast:
2	chr5:57530338..57532834-chr5:57737218..57739511,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs149132	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs150249	0.87[ASN][1000 genomes]
rs151890	0.88[ASN][1000 genomes]
rs151892	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151893	0.87[ASN][1000 genomes]
rs154472	0.88[ASN][1000 genomes]
rs154473	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs154474	0.88[ASN][1000 genomes]
rs154490	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154491	0.88[ASN][1000 genomes]
rs154494	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs158150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158152	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs158153	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs158154	0.81[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs158158	0.88[ASN][1000 genomes]
rs158159	0.88[ASN][1000 genomes]
rs158160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158280	0.87[ASN][1000 genomes]
rs158281	0.80[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs158282	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs32614	0.85[ASN][1000 genomes]
rs32616	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs42739	0.85[ASN][1000 genomes]
rs832624	0.84[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57735200-57751400	Weak transcription	Psoas Muscle	Psoas
2	chr5:57735800-57737800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:57737000-57737800	Enhancers	Fetal Lung	lung
4	chr5:57737000-57747400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:57737400-57740800	Weak transcription	A549	lung
6	chr5:57737400-57747000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:57737600-57737800	Enhancers	Aorta	Aorta
8	chr5:57737600-57738000	Enhancers	Pancreas	Pancrea

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