Variant report

Variant	rs32614
Chromosome Location	chr5:57747371-57747372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:57480978..57482713-chr5:57745700..57747578,2	MCF-7	breast:
2	chr5:57375298..57377194-chr5:57746717..57748968,2	MCF-7	breast:
3	chr5:57480309..57485854-chr5:57746705..57749645,6	MCF-7	breast:
4	chr5:56594281..56596784-chr5:57747106..57749163,2	MCF-7	breast:
5	chr5:57528101..57530824-chr5:57745599..57747448,2	MCF-7	breast:
6	chr5:57541847..57544684-chr5:57747160..57748861,2	MCF-7	breast:
7	chr5:57534237..57536303-chr5:57746058..57748624,2	MCF-7	breast:
8	chr5:57370978..57374867-chr5:57746378..57750088,5	MCF-7	breast:
9	chr5:57554637..57557710-chr5:57746924..57749357,4	MCF-7	breast:
10	chr5:57714527..57717379-chr5:57746221..57748788,2	MCF-7	breast:
11	chr5:57206110..57208433-chr5:57745536..57747516,2	MCF-7	breast:

No data

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs149132	0.85[ASN][1000 genomes]
rs150249	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs151890	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs151892	0.85[ASN][1000 genomes]
rs151893	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs154472	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs154474	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs154490	0.85[ASN][1000 genomes]
rs154491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs154492	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs154493	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs158150	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs158152	0.82[ASN][1000 genomes]
rs158153	0.82[ASN][1000 genomes]
rs158154	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158160	0.85[ASN][1000 genomes]
rs158280	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs158281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs173450	0.85[ASN][1000 genomes]
rs2291634	0.81[AFR][1000 genomes]
rs32616	0.84[ASN][1000 genomes]
rs3763110	0.81[AFR][1000 genomes]
rs39967	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41088	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs42739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs42740	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs697134	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs702709	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs702720	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73094318	0.81[AFR][1000 genomes]
rs73094327	0.81[AFR][1000 genomes]
rs73094329	0.81[AFR][1000 genomes]
rs832631	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs832636	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57735200-57751400	Weak transcription	Psoas Muscle	Psoas
2	chr5:57737000-57747400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:57737800-57748600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:57737800-57749000	Weak transcription	Fetal Lung	lung
5	chr5:57741400-57750200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:57742200-57747800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:57742600-57747400	Weak transcription	Fetal Brain Female	brain
8	chr5:57742800-57750000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:57742800-57750800	Weak transcription	Aorta	Aorta
10	chr5:57742800-57751400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:57743000-57748800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:57743000-57749400	Weak transcription	NHDF-Ad	bronchial
13	chr5:57743000-57750200	Weak transcription	Pancreas	Pancrea
14	chr5:57743200-57748400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:57743200-57750000	Weak transcription	NHLF	lung
16	chr5:57743600-57748000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:57743800-57748000	Weak transcription	HSMM	muscle
18	chr5:57743800-57748400	Weak transcription	Fetal Kidney	kidney
19	chr5:57743800-57751000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr5:57744000-57750200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr5:57744400-57749200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:57745400-57747400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:57745600-57748400	Weak transcription	Brain Germinal Matrix	brain
24	chr5:57745800-57747400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:57746000-57748600	Genic enhancers	A549	lung
26	chr5:57746000-57751000	Strong transcription	Fetal Muscle Trunk	muscle
27	chr5:57746200-57747400	Genic enhancers	NH-A	brain
28	chr5:57746200-57749600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:57746200-57750200	Strong transcription	Fetal Muscle Leg	muscle
30	chr5:57746400-57748000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr5:57746400-57748800	Enhancers	Placenta	Placenta
32	chr5:57746400-57749200	Weak transcription	Adipose Nuclei	Adipose
33	chr5:57746400-57749400	Weak transcription	HSMMtube	muscle
34	chr5:57746400-57750000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr5:57746600-57747800	Weak transcription	HMEC	breast
36	chr5:57746600-57748400	Weak transcription	NHEK	skin
37	chr5:57746600-57749200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr5:57746800-57748000	Weak transcription	Osteobl	bone
39	chr5:57746800-57748400	Weak transcription	Fetal Intestine Large	intestine
40	chr5:57746800-57749600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr5:57746800-57750000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr5:57746800-57750200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr5:57746800-57750400	Weak transcription	Fetal Thymus	thymus
44	chr5:57746800-57750800	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr5:57747000-57747400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:57747000-57747800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr5:57747000-57747800	Weak transcription	Liver	Liver
48	chr5:57747000-57748600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr5:57747000-57750400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr5:57747000-57752800	Weak transcription	Fetal Intestine Small	intestine

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