Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57479311..57481090-chr5:57734441..57736091,2	MCF-7	breast:
2	chr5:57734501..57736498-chr5:57754064..57756056,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs149132	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs150249	0.83[ASN][1000 genomes]
rs151890	0.84[ASN][1000 genomes]
rs151892	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs151893	0.83[ASN][1000 genomes]
rs154472	0.84[ASN][1000 genomes]
rs154473	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs154474	0.84[ASN][1000 genomes]
rs154490	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs154491	0.84[ASN][1000 genomes]
rs154494	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs158150	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs158153	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs158154	0.84[ASN][1000 genomes]
rs158158	0.84[ASN][1000 genomes]
rs158159	0.84[ASN][1000 genomes]
rs158160	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs158280	0.83[ASN][1000 genomes]
rs158281	0.84[ASN][1000 genomes]
rs158282	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs173450	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs32614	0.82[ASN][1000 genomes]
rs32616	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs42739	0.82[ASN][1000 genomes]
rs832624	0.81[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57734200-57736000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:57734400-57737600	Weak transcription	Pancreas	Pancrea
3	chr5:57735200-57751400	Weak transcription	Psoas Muscle	Psoas
4	chr5:57735400-57736400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:57735600-57736600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:57735800-57736000	Enhancers	Fetal Lung	lung
7	chr5:57735800-57736000	Enhancers	Stomach Mucosa	stomach
8	chr5:57735800-57737400	Enhancers	A549	lung
9	chr5:57735800-57737800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: