Variant report

Variant	rs158158
Chromosome Location	chr5:57739455-57739456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57530338..57532834-chr5:57737218..57739511,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs149132	0.88[ASN][1000 genomes]
rs150249	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs151890	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151892	0.88[ASN][1000 genomes]
rs151893	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs154472	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154474	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154490	0.88[ASN][1000 genomes]
rs154491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154492	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs154493	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs158150	0.81[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs158152	0.84[ASN][1000 genomes]
rs158153	0.84[ASN][1000 genomes]
rs158154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158160	0.88[ASN][1000 genomes]
rs158280	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs158281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs173450	0.88[ASN][1000 genomes]
rs2291634	0.81[AFR][1000 genomes]
rs32614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs32616	0.82[ASN][1000 genomes]
rs3763110	0.81[AFR][1000 genomes]
rs39967	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41088	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs42739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs42740	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs697134	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs702709	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs702720	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73094318	0.81[AFR][1000 genomes]
rs73094327	0.81[AFR][1000 genomes]
rs73094329	0.81[AFR][1000 genomes]
rs832631	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs832636	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57735200-57751400	Weak transcription	Psoas Muscle	Psoas
2	chr5:57737000-57747400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:57737400-57740800	Weak transcription	A549	lung
4	chr5:57737400-57747000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:57737800-57748600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:57737800-57749000	Weak transcription	Fetal Lung	lung

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