Variant report

Variant	rs16897666
Chromosome Location	chr8:100771546-100771547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:100771423..100773647-chr8:100780268..100782078,2	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10504991	0.88[EUR][1000 genomes]
rs10504992	0.88[EUR][1000 genomes]
rs11984855	0.82[EUR][1000 genomes]
rs11987013	0.88[EUR][1000 genomes]
rs11987034	0.88[EUR][1000 genomes]
rs11989649	0.85[EUR][1000 genomes]
rs11992778	0.88[EUR][1000 genomes]
rs11994623	0.88[EUR][1000 genomes]
rs11996543	0.94[EUR][1000 genomes]
rs1349244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1349245	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449786	1.00[EUR][1000 genomes]
rs1449790	0.94[EUR][1000 genomes]
rs1449791	0.94[EUR][1000 genomes]
rs1552443	0.88[EUR][1000 genomes]
rs16897410	0.88[EUR][1000 genomes]
rs16897439	0.88[EUR][1000 genomes]
rs16897488	0.88[EUR][1000 genomes]
rs16897504	0.85[EUR][1000 genomes]
rs16897573	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs16897656	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897662	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897701	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897726	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17331148	1.00[EUR][1000 genomes]
rs1979115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1979117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2084554	0.97[EUR][1000 genomes]
rs2084555	0.97[EUR][1000 genomes]
rs2100220	0.97[EUR][1000 genomes]
rs2122341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167101	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28372694	0.82[EUR][1000 genomes]
rs2871953	0.97[EUR][1000 genomes]
rs28847009	0.88[EUR][1000 genomes]
rs4288349	0.88[EUR][1000 genomes]
rs4342557	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4531021	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734434	0.88[EUR][1000 genomes]
rs4734435	1.00[EUR][1000 genomes]
rs4734436	1.00[EUR][1000 genomes]
rs4734437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734439	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735616	0.88[EUR][1000 genomes]
rs4735622	0.88[EUR][1000 genomes]
rs4735623	0.88[EUR][1000 genomes]
rs4735624	0.88[EUR][1000 genomes]
rs4735631	0.94[EUR][1000 genomes]
rs4735632	1.00[EUR][1000 genomes]
rs4735634	1.00[EUR][1000 genomes]
rs4735635	1.00[EUR][1000 genomes]
rs4735636	1.00[EUR][1000 genomes]
rs4735637	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735638	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735639	0.90[ASN][1000 genomes]
rs4735642	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735645	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57753543	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61753724	1.00[EUR][1000 genomes]
rs7003135	0.97[EUR][1000 genomes]
rs73271394	0.94[EUR][1000 genomes]
rs73273207	0.97[EUR][1000 genomes]
rs7387462	0.88[EUR][1000 genomes]
rs7832916	0.88[EUR][1000 genomes]
rs7833256	0.88[EUR][1000 genomes]
rs7833870	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841162	0.82[EUR][1000 genomes]
rs921313	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019256	chr8:100336249-100852803	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539698	chr8:100336249-100852803	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2758167	chr8:100404151-100838624	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
4	esv2759633	chr8:100404151-100838624	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1029616	chr8:100442135-100796643	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1033944	chr8:100737321-100916345	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100710200-100785000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:100725600-100779800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:100727000-100779000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr8:100734200-100779200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr8:100734600-100796600	Weak transcription	Pancreas	Pancrea
6	chr8:100737800-100779000	Weak transcription	Left Ventricle	heart
7	chr8:100761800-100787200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr8:100763600-100796600	Weak transcription	HSMMtube	muscle
9	chr8:100764200-100779200	Weak transcription	Primary B cells from cord blood	blood
10	chr8:100766000-100779800	Weak transcription	Lung	lung
11	chr8:100766200-100798000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr8:100766200-100815600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr8:100766800-100783000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:100767000-100779000	Weak transcription	Primary T cells from cord blood	blood
15	chr8:100767600-100779800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:100767600-100779800	Weak transcription	Thymus	Thymus
17	chr8:100767600-100782800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr8:100767600-100787200	Weak transcription	Fetal Thymus	thymus
19	chr8:100768800-100779000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr8:100769000-100774400	Weak transcription	Osteobl	bone
21	chr8:100769000-100798200	Weak transcription	Psoas Muscle	Psoas
22	chr8:100769200-100772000	Enhancers	Rectal Smooth Muscle	rectum
23	chr8:100769400-100779000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr8:100769600-100771600	Enhancers	Fetal Stomach	stomach
25	chr8:100769600-100779000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr8:100769600-100791000	Weak transcription	Fetal Kidney	kidney
27	chr8:100769800-100778800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:100769800-100779200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr8:100769800-100779800	Weak transcription	Aorta	Aorta
30	chr8:100770000-100777600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr8:100770000-100779200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr8:100770000-100780000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:100770000-100787000	Weak transcription	Adipose Nuclei	Adipose
34	chr8:100770200-100771600	Enhancers	Fetal Lung	lung
35	chr8:100770200-100779800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr8:100770600-100773600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr8:100770600-100774400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr8:100770600-100779000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr8:100770600-100779200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:100771000-100772000	Enhancers	Colon Smooth Muscle	Colon
41	chr8:100771000-100783800	Weak transcription	HSMM	muscle
42	chr8:100771200-100779800	Weak transcription	Ovary	ovary
43	chr8:100771400-100779000	Weak transcription	Primary B cells from peripheral blood	blood
44	chr8:100771400-100786400	Weak transcription	GM12878-XiMat	blood

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